BAC Information

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BAC

Clone NameMSMg01-278B01
Chromosome5 (Build37)
Map Location 116,370,764 - 116,507,225
singlet/doubletdoublet
Overlap geneCit, Prkab1, LOC545798
Upstream geneOasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032
Downstream geneCcdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278B01.T7 (MSMg01no278_b01.b1)MSMg01-278B01.TJ (MSMg01no278_b01.g1)
ACCAG415792AG415793
length713718
length of high quality
(start - end)
603 (74 - 676)329 (384 - 712)
definitionCHROMAT_FILE: MSMg01no278_b01.b1 PHD_FILE: MSMg01no278_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:18 2005CHROMAT_FILE: MSMg01no278_b01.g1 PHD_FILE: MSMg01no278_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,370,764 - 116,371,366)(116,506,897 - 116,507,225)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGACGGAGCCGCGG
AATTCCATTTTTTTCGAAAAGAAAGGTTTATTCATGTGTTTTATGTTGTG
TGTTTTCCTGCACATGTGTCACATTTCATCACTTTCCGGGAGTTCTGGGC
CACAGGCGTGCACCGAGGCCTCAGAATTCTGATGAAGTACTCCACAGAAA
AGTGGTTTTGTTTCATTCTTAAAACTTCTCTTCAACAATATAAACTTTAA
ATAACGCCATGTGTGCATCATACTAGACACTTGATGTCTGAAAACCAAAC
CTGTATGAGGTGGTTTGGTTGTTGTCAGCTGCACTGGGATGAGACCTCCC
GAGCTGAGGTTTATATTACAGTCAATTCCAGGGAAAGCTACTGTCAGTCA
CTCTGGAAGCTGGTTACTGATAAACCTAGAGAGAGTGAGTTGAGGAAATG
TTCTGGAATGTTTGTTGGGGCACAGGGGACACTATTCAGGAGTGCATATT
TGGGGACTGGAGCGGTGGCTCGGTGATTAAGAGCCCTTGCTGCTCTTGGA
GAGGGCCCAGATTTGGTTTCCAACAAGGGGCTTGCAACCGCCTCTAGTTC
CAGTTCCAGGAGATCTGATGCTCTCTTCTGGCCTCTTCAGGCTTCTTCAT
GTACTGGGTGCACATACAGTCTCAGGCAAAACACAACACTCACGAACATA
ATTTTTTTAAAAA
TCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCAGCCAACTAGCCTGGCCTACCT
GGTTAGCACCGGGCCAGTGAGACACCCTGTCTCTGTAAAAAGATGGATAC
CTGAGGAACAACACTTTCAGTTATGTTCTGGCCACACCCACACATGCACA
CACATGACCAACCCCTTATACACATATGCACACTAAATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAAAAAAAAAAATACCAGATAGCCAGGCGTGGTGGTAGATACCTTTAAT
TCCAGCCCCCATTATATAGACACCCCGACCCATCAAAAGTTCAAGGCCAG
CCTAGGTAACACAGGAAACACAGGAAGCCCTTGTAATAAATAAGTAAGTT
TTCATCAAGAAACAATGTGTTTCAATGATAACACAATATTAAGGTGGGAA
AGTCTGTCACTACGACTCAGTCTCTTGAATAACAATGGAAACAGAGCACA
GAGCTATGACAGAGCTAAAAGCATCAGCTCGCCCTGTAGTGGGCAGAAAC
TAGTAGTCATATTTTTGGAACAAAGAAAAATATAAAATATCCAAACACCT
ATATCTATGTATGTGATACAGAGAGAGGGAGAGAGAGAAAGAGAGATACT
GAGACAGAGACAGAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_b01.b1 MSMg01no278_b01.b1 CHROMAT_FILE:
MSMg01no278_b01.b1 PHD_FILE: MSMg01no278_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:18 2005
         (603 letters)



>mm_chr5_116370564_116371566
          Length = 1003

 Score = 1089 bits (563), Expect = 0.0
 Identities = 593/603 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtttattcatgtgttttatgttgtgtgttttcctgcacatgtgtcacatttcatcact 60
           |||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct: 201 aggtttattcatgtgttttatgttgtgtgttttcctgcacgtatgtcaaatttcatcact 260

                                                                       
Query: 61  ttccgggagttctgggccacaggcgtgcaccgaggcctcagaattctgatgaagtactcc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccgggagttctgggccacaggtgtgcaccgaggcctcagaattctgatgaagtactcc 320

                                                                       
Query: 121 acagaaaagtggttttgtttcattcttaaaacttctcttcaacaatataaactttaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagaaaagtggttttgtttcattcttaaaacttctcttcaacaatataaactttaaata 380

                                                                       
Query: 181 acgccatgtgtgcatcatactagacacttgatgtctgaaaaccaaacctgtatgaggtgg 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgccatgtgtgcatcagactagacacttgatgtctgaaaaccaaacctgtatgaggtgg 440

                                                                       
Query: 241 tttggttgttgtcagctgcactgggatgagacctcccgagctgaggtttatattacagtc 300
           |||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 441 tttggttgctgtcagctgcactgggatgagacctcccgagctgaggcttacattacagtc 500

                                                                       
Query: 301 aattccagggaaagctactgtcagtcactctggaagctggttactgataaacctagagag 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 aattccagggaaagctactgtcagtcactttggaagctggttactgataaacctagagag 560

                                                                       
Query: 361 agtgagttgaggaaatgttctggaatgtttgttggggcacaggggacactattcaggagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgagttgaggaaatgttctggaatgtttgttggggcacaggggacactattcaggagt 620

                                                                       
Query: 421 gcatatttggggactggagcggtggctcggtgattaagagcccttgctgctcttggagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatatttggggactggagcggtggctcggtgattaagagcccttgctgctcttggagag 680

                                                                       
Query: 481 ggcccagatttggtttccaacaaggggcttgcaaccgcctctagttccagttccaggaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcccagatttggtttccaacaaggggcttgcaaccgcctctagttccagttccaggaga 740

                                                                       
Query: 541 tctgatgctctcttctggcctcttcaggcttcttcatgtactgggtgcacatacagtctc 600
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 tctgatgctctcttctggcctcttcagacttcttcatgtactgggtgcacatacagtctc 800

              
Query: 601 agg 603
           |||
Sbjct: 801 agg 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no278_b01.g1 MSMg01no278_b01.g1 CHROMAT_FILE:
MSMg01no278_b01.g1 PHD_FILE: MSMg01no278_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:18 2005
         (329 letters)



>mm_chr5_116506740_116507468
          Length = 729

 Score =  605 bits (313), Expect = e-177
 Identities = 325/329 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaagttcaaggccagcctaggtaacacaggaaacacaggaagcccttgtaataaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caaaagttcaaggccagcctaggtaacacaggaaacacaggaagcccttgtaataaataa 427

                                                                       
Query: 61  gtaagttttcatcaagaaacaatgtgtttcaatgataacacaatattaaggtgggaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 426 gtaagttttcatcaagaaacaatgtgtttcaatgataacacaacattaaggtgagaaagt 367

                                                                       
Query: 121 ctgtcactacgactcagtctcttgaataacaatggaaacagagcacagagctatgacaga 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctatcactacgactcagtctcttgaataacaatggaaacagagcacagagctatgacaga 307

                                                                       
Query: 181 gctaaaagcatcagctcgccctgtagtgggcagaaactagtagtcatatttttggaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gctaaaagcatcagctcgccctgtagtgggcagaaactagtagtcatatttttggaacaa 247

                                                                       
Query: 241 agaaaaatataaaatatccaaacacctatatctatgtatgtgatacagagagagggagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 agaaaaatataaaatatccaaacacctatatctatgtatgtgatacagagagagggagag 187

                                        
Query: 301 agagaaagagagatactgagacagagaca 329
           |||||||||||||||| ||||||||||||
Sbjct: 186 agagaaagagagatacagagacagagaca 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)