Query= MSMg01no278_h11.b1 MSMg01no278_h11.b1 CHROMAT_FILE:
MSMg01no278_h11.b1 PHD_FILE: MSMg01no278_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:48 2005
(687 letters)
>mm_chr5_34340989_34342075
Length = 1087
Score = 1270 bits (657), Expect = 0.0
Identities = 677/684 (98%)
Strand = Plus / Plus
Query: 4 ggaattctccatctccgcctactccctccctcttccccttcaggcacaagagggcctaag 63
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccaactctgcctactccctccctcttccccttcaggcacaagagggcctaag 263
Query: 64 ctgtgggatcctggtgttctgagtcttctgaatgactgaggcctctagctaagggtggcg 123
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 ctgtgggatcctggtgttctgagtcttctgaatgactgaggcttctagctaagggtggcg 323
Query: 124 tgtcagcaggggagagccagaaagaagtccttcccttggtggcctggctccactgtgtcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtcagcaggggagagccagaaagaagtccttcccttggtggcctggctccactgtgtcc 383
Query: 184 tctgttggacaccttttcttgctacctgccgtttgtttgtctgttatggggtgaagtcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctgttggacaccttttcttgctacctgccgtttgtttgtctgttatggggtgaagtcct 443
Query: 244 ggctggatcttgagccagccgagagtgctcagggtggaggaatcctgggtgacacaggag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggctggatcttgagccagccgagagtgctcagggtggaggaatcctgggtgacacaggag 503
Query: 304 atgtcccagggagcagaagattgagcaggggcccaggccttacccggtctcctgactaga 363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 atgtcccagggagcagaagattgagcaggagcccaggccttacccggtctcctgactaga 563
Query: 364 gtagtgaaccacaaggtattatcccagaccccaaggctttctgtagaatgagggtctggg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtagtgaaccacaaggtattatcccagaccccaaggctttctgtagaatgagggtctggg 623
Query: 424 actctggtctccaggagctggagattggttggtctctctgaggcaggccatgaagcaggc 483
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 624 actctggtctccaggagctggagactggttggtctctctgaggcaggccatgaagcaggc 683
Query: 484 tgggttgtgggagccagaggagagacattttaaggtgtgaggggatgacacagggggctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgggttgtgggagccagaggagagacattttaaggtgtgaggggatgacacagggggctg 743
Query: 544 gccagnaagaaccaggtctatttcaaggaagggcagccttcttagccttgccagctatag 603
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gccagaaagaaccaggtctatttcaaggaagggcagccttcttagccttgccagctatag 803
Query: 604 ttttctgccagcttctccccagctatcccatcttgtaccccaatgccctgtttagctggc 663
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttttctgccagcttctccccagccatcccatcttgtaccccaatgccctgtttagctggc 863
Query: 664 cttggtgcctgctgttttccttgg 687
||||||||||||||||||||||||
Sbjct: 864 cttggtgcctgctgttttccttgg 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no278_h11.g1 MSMg01no278_h11.g1 CHROMAT_FILE:
MSMg01no278_h11.g1 PHD_FILE: MSMg01no278_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:48 2005
(662 letters)
>mm_chr5_34353988_34355048
Length = 1061
Score = 1241 bits (642), Expect = 0.0
Identities = 657/662 (99%), Gaps = 1/662 (0%)
Strand = Plus / Minus
Query: 1 agcatggaagagtgtgctgtaggagggagcatcctggcaggcttttggcaaagggatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 agcatggaagagtgtgctgtaggagggagcatcctggcaggcttttggcaaagggatgag 802
Query: 61 attaggcccttctggaaagttttctcaaaggaaccaggatctgtctgcctgtgttaggtc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attaggcccttctggaaagttctctcaaaggaaccaggatctgtctgcctgtgttaggtc 742
Query: 121 aaccagatgcaaataccgtagctctgtgtcctctgtagggcagatgtaagctatggaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaccagatgcaaataccgtagctctgtgtcctctgtagggcagatgtaagctatggaggc 682
Query: 181 atgccctccttctgggagcctgggtggtctaagcctgcattcttatgcttctcctgcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgccctccttctgggagcctgggtggtctaagcctgcattcttatgcttctcctgcttg 622
Query: 241 tccctgtgccccagcttcctgtgagaagtgcgatgtctctgtgtctgtgatggtgatgtg 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccctgtgccccagcttcccgtgagaagtgcgatgtctctgtgtctgtgatggtgatgtg 562
Query: 301 tgagtgactaacagtcacacttattaggtcctgccacactggcagctcagactgcatggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagtgactaacagtcacacttattaggtcctgccacactggcagctcagactgcatggt 502
Query: 361 gtgatttcaagaagtgtgaaggcacttctgctaaatctggaaagagttgcaagtgcctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgatttcaagaagtgtgaaggcacttctgctaaatctggaaagagttgcaagtgcctct 442
Query: 421 tctgaagtttctgcccatgaaaagtaagccccttgggagccaaggcctaccagacacctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgaagtttctgcccatgaaaagtaagccccttgggagccaaggcctaccagacacctt 382
Query: 481 gatgtgagtttaaggaaacacatcagtgctacagcttagtccctgccgtgtcctgccaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgtgagtttaaggaaacacatcagtgctacagcttagtccctgccgtgtcctgccaca 322
Query: 541 gtcgaacttctggaagggcagtgttggtgccctagccagaggaagcacatgagacacaaa 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 gtcgaacttctggaagggcagtgttggtgccttagccagaggaagcacatgagacacaaa 262
Query: 601 gacgcctttttgtgaatatctctgatgaatagtgagtgtatacttcactattccatagtc 660
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gacgcctttttgtgaatgtctctgatgaatagtgagtgtatacttcactattcc-tagtc 203
Query: 661 tg 662
||
Sbjct: 202 tg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space: 685252
Effective search space used: 685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
