Query= MSMg01no278_i09.b1 MSMg01no278_i09.b1 CHROMAT_FILE:
MSMg01no278_i09.b1 PHD_FILE: MSMg01no278_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:53 2005
(320 letters)
>mm_chr5_81580305_81581018
Length = 714
Score = 511 bits (264), Expect = e-149
Identities = 298/312 (95%), Gaps = 6/312 (1%)
Strand = Plus / Minus
Query: 6 ggaattctccttgtttgcgcatttattcaaattcctggatagaaaactaagatacattat 65
||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggaattctccttggatg-gtatttattcaaattcctggatagaaaactaagatacattat 453
Query: 66 aaaaattgctttagaacccaaacctaaattgctaatcaatccacatattgaaaaatattt 125
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaaaattgctttag-----aaacctaaattgctaatcaatccacatattgaaaaatattt 398
Query: 126 gaatgtaacaaagatcataaaattataggattaagaaagaccagaagaacatatccatta 185
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 397 gaatgtaacaaagatcataaaattataggattgagaaagaccagaagaacatatccatta 338
Query: 186 aagaagacaaaaggctataaatgactttcatcaacacagctaggataacttttattttgg 245
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 337 aagaagacaaaaggctataaatggctttcatcaacacagctaggataacttttattttgg 278
Query: 246 tatgattttatcttgtatttgtgcaagacttgtttattgccttgtgaagacttacatgta 305
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 277 tatgattttatcttgtatttgtgcaagacttgtgcagtgccttgtgaagacttacatgta 218
Query: 306 ttttaaatagta 317
||||||||||||
Sbjct: 217 ttttaaatagta 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 714
Length adjustment: 9
Effective length of query: 311
Effective length of database: 705
Effective search space: 219255
Effective search space used: 219255
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no278_i09.g1 MSMg01no278_i09.g1 CHROMAT_FILE:
MSMg01no278_i09.g1 PHD_FILE: MSMg01no278_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:53 2005
(288 letters)
>mm_chr5_81405802_81406489
Length = 688
Score = 485 bits (251), Expect = e-141
Identities = 278/287 (96%)
Strand = Plus / Plus
Query: 1 aaataaaaatgcacaggtaaaatacattgtcaaaatcctgattttgaccatttacaatta 60
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 201 aaataaaaatgcacaggtaaaatacattctcaaaatcctgattttgacaatttacaatta 260
Query: 61 ctgggtggtttaaacccagagcaacatttccaaagctcctggtggaactttaatctttta 120
||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 261 ctgaatggtttaaacccagagcaacatttctaaagctcctggtggaactttaacctttta 320
Query: 121 caacaggcagtctagatcttcgtgtcacttacattttgtgtttggttttagtttttggtt 180
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 321 caacaggcagtctagatcttcgtgtcacttacattttgtgttttgtttgagtttttggtt 380
Query: 181 tgcacacagcagataagtcatcgcccattgtggccagcagtaaatgagaaattattttta 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacacagcagataagtcattgcccattgtggccagcagtaaatgagaaattattttta 440
Query: 241 tggtttgatctcttagtgatgtctgaaattaggttaatagattatga 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtttgatctcttagtgatgtctgaaattaggttaatagattatga 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
