BAC Information

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BAC

Clone NameMSMg01-279C05
Chromosome5 (Build37)
Map Location 47,314,775 - 47,315,171
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279C05.T7 (MSMg01no279_c05.b1)MSMg01-279C05.TJ (MSMg01no279_c05.g1)
ACCAG416580AG416581
length751757
length of high quality
(start - end)
707 (45 - 751)441 (77 - 517)
definitionCHROMAT_FILE: MSMg01no279_c05.b1 PHD_FILE: MSMg01no279_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:39 2005CHROMAT_FILE: MSMg01no279_c05.g1 PHD_FILE: MSMg01no279_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCAGTAACCCATCTGACCCTGGGTTGGGAAGATGTGAATGACTCC
TTCTGTTTATTTAATGTTTAAGGGACTGTTTAGATAGTTTATCTGATCTG
AATTTAACTTTGGTAAATGTATCTGTCTAGAAAATAACTGTTTCTTCTAG
ATTTTCTAATTTTGTTGAGTATAGGCTTTTGTAATAAGATCTGATGTTTT
TTTGTTAATTTCCTCAGTTTCTGTTGTTATATCTCCCTTTTCATTCCTGA
TTTTGTTAATTTGGATGCTGAATCTTTGCCTTTTACTTAGTTCCACTAAG
TGTTTATCTATTTTTTTTTTGATTGCCTCAAAGAAAGCTCTTGTTTTTGT
TGATTCTTTGTATTGTTCTCTTTGTTTCTAATTGGTTGATTTCTGCCCTG
AGATTGACTATTTCCTGACTATTTCCTCTTGGGTGTATTTGCTTCTTTTT
GCTCTAGAGTTTTCAGGCATGCTCTTAAGTTGCTAGTGTAGAATCTCTTC
AATTTCTTTATAATGGCACTCTGAGCTATGAAGTTTCCTTTTAACATTGC
TTTCCTTGTGTCCCATTAAGTTTGGATATGCTGTGCCTTAAATTTCATTG
ATGTTTAAAAAGTCTTCAATTTCTTTCTTCATTTCTTCCCTGACCAAGTT
ATCATTGAGTAGAGAGTTATTCACTCTCCATGAATATGTAGGCTTTCTGT
T
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTTAGTTCAAGTTAATACATAT
CAATAAGGATGAGCAATGTTCTACCTAACAAGTTAATTTCCCAGACTATG
CAAGATGAGAACAAAACATCAAATCCTATTCACTTTTGGATGCTCATACT
TTTTTCTCTAATAGGATTCAATTCATTTCAATGTTCATCTCCATTATTCA
GATTCATTTATCCCCCTAAATGTTGTATGTCTTGAAAAAAGACCATGCAC
AACTTAGAGTGGGTCTTTGAATATCTTAATTCCCCATATCTAATCACTAA
AATCAAGAGTAAATATCATGAATATACATTTATTCCCTACACAATCCTAG
TCATCCAGAAAATTGATGTTGGTGAGATGGACTAGGCAAGTCTCAGACAG
GAAAAAAGACATAACTCTAAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGNTGNNCNTCNTCNTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCATCATCTTCTTCATCTTCTCCTTCTTCTCCTCCTCCTCC
ACCTCCTCCTCTTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTT
CTTCTTCTTCCTTCTTCATCTTCATCTTCCTCCTCATCTTCCTCTTCATC
TTCATCATCATCCTCTTCTACCTCTCCTTCTTCTCCTTCTTATTCAACTA
TCTTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_c05.g1 MSMg01no279_c05.g1 CHROMAT_FILE:
MSMg01no279_c05.g1 PHD_FILE: MSMg01no279_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:40 2005
         (441 letters)



>mm_chr5_47314575_47315415
          Length = 841

 Score =  752 bits (389), Expect = 0.0
 Identities = 395/397 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttagttcaagttaatacatatcaataaggatgagcaatgttctacctaacaagttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 201 catttagttcaagttaatacatatcaataaggatgagcaatgttctagctaacaagttag 260

                                                                       
Query: 61  tttcccagactatgcaagatgagaacaaaacatcaaatcctattcacttttggatgctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcccagactatgcaagatgagaacaaaacatcaaatcctattcacttttggatgctca 320

                                                                       
Query: 121 tacttttttctctaataggattcaattcatttcaatgttcatctccattattcagattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacttttttctctaataggattcaattcatttcaatgttcatctccattattcagattca 380

                                                                       
Query: 181 tttatccccctaaatgttgtatgtcttgaaaaaagaccatgcacaacttagagtgggtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatccccctaaatgttgtatgtcttgaaaaaagaccatgcacaacttagagtgggtct 440

                                                                       
Query: 241 ttgaatatcttaattccccatatctaatcactaaaatcaagagtaaatatcatgaatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaatatcttaattccccatatctaatcactaaaatcaagagtaaatatcatgaatata 500

                                                                       
Query: 301 catttattccctacacaatcctagtcatccagaaaattgatgttggtgagatggactagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catttattccctacacaatcctagtcatccagaaaattgatgttggtgagatggactagg 560

                                                
Query: 361 caagtctcagacaggaaaaaagacataactctaagtt 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagtctcagacaggaaaaaagacataactctaagtt 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)