Query= MSMg01no279_d20.b1 MSMg01no279_d20.b1 CHROMAT_FILE:
MSMg01no279_d20.b1 PHD_FILE: MSMg01no279_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:47 2005
(207 letters)
>mm_chr5_19294275_19294879
Length = 605
Score = 364 bits (188), Expect = e-105
Identities = 200/204 (98%), Gaps = 2/204 (0%)
Strand = Plus / Minus
Query: 1 gttcctggcaactcttatggagttggagccatgtggccaataacttaggtctgcccatat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gttcctggcaactcttatggagttggagccatgtggccaataacttaggtctgcccata- 344
Query: 61 tttttttttttaagaattactaaaaaaacacaagtttttcattttcttctatttcttttt 120
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 343 tttttttttttaagaattact-aaaaaacacaactttttcattttcttctatttcttttt 285
Query: 121 ccttattttggattctgaccaaagattggcatgccttcctggacactctgaccttcccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccttattttggattctgaccaaagattggcatgccttcctggacactctgaccttcccca 225
Query: 181 ttctctttctagaagatatgctcc 204
||||||||||||||| ||||||||
Sbjct: 224 ttctctttctagaagttatgctcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 605
Length adjustment: 9
Effective length of query: 198
Effective length of database: 596
Effective search space: 118008
Effective search space used: 118008
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no279_d20.g1 MSMg01no279_d20.g1 CHROMAT_FILE:
MSMg01no279_d20.g1 PHD_FILE: MSMg01no279_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:47 2005
(289 letters)
>mm_chr5_19275923_19276611
Length = 689
Score = 520 bits (269), Expect = e-152
Identities = 284/289 (98%)
Strand = Plus / Plus
Query: 1 agctgaagtttcacttgattgatgtcaagatttggtttgattgtcatctgtgcctatttt 60
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agctgaagtttcacttaattgatgtcaagatttggtttgattgtcatctgcgcctatttt 260
Query: 61 taaatctcttgtaaaatccaaaatgtgtttcctggggctctctgtgcatgtatatgaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatctcttgtaaaatccaaaatgtgtttcctggggctctctgtgcatgtatatgaatg 320
Query: 121 caggcatgtttatgatgggatattatttttaggggtatgcaaaggcttcatgatcttgca 180
||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 caggcatgtttataatgggctattatttttaggggtatgaaaaggcttcatgatcttgca 380
Query: 181 ctgcaaacagtagcttatttttacatgctgtgtaattggttcatctgcttctcagcaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcaaacagtagcttatttttacatgctgtgtaattggttcatctgcttctcagcaatc 440
Query: 241 actgacaatatttcagctgatcacagacaatgaagttttaggataaaaa 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgacaatatttcagctgatcacagacaatgaagttttaggataaaaa 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
