BAC Information

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BAC

Clone NameMSMg01-279G04
Chromosome5 (Build37)
Map Location 19,398,816 - 19,557,783
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279G04.T7 (MSMg01no279_g04.b1)MSMg01-279G04.TJ (MSMg01no279_g04.g1)
ACCAG416764AG416765
length756759
length of high quality
(start - end)
324 (383 - 706)297 (77 - 373)
definitionCHROMAT_FILE: MSMg01no279_g04.b1 PHD_FILE: MSMg01no279_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:57 2005CHROMAT_FILE: MSMg01no279_g04.g1 PHD_FILE: MSMg01no279_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,557,460 - 19,557,783)(19,398,816 - 19,399,100)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTGAGTGTGTAACTTCAATGCCAAGTACAAATGTGACTGTCTCT
GACAGTGGGCCAGTGTCATACTTAGGGTTTTCATTGCTGTGAAGGGACAC
AATGACCAAGGCAACTCTTATGAAGGAAAGCATTTAACTGGGGTTGGAGT
ACCGGTTCAGAGGTCCAGTAATCAAGGTGGGAGCATGCCAATGTGCTGGA
TACTAAGAGTTCTACATCTTCATTGAGAGGAAGCCAGGAGCAGGCTTGTT
TGACATGGCTAGAAGGAGGCATTCAAAGCCCACTCCCACAATGACCCACT
TCCTCCAACATATTTTATACCCATCCCCACAAGGCCACAGCTCCCAATAG
TGCCACTCCCTGCCCCAAGCATATACAAACCACCACAGTCAGTATTAAAT
ATTTCATAAACATGTCCTCCTTAATTCTGAAAATTTCATAGGTATAGTGC
AGCTGGTAGCTTCCTAATATCAAAACAAAAAGGGTGATCACTGAGAAAGA
TACAGGCACTCATCTGCCTAGAGCAACTCGCAACCATTTTCCTCCTTATT
TAAAAAACAGGTGTCAAGCAGATAATGTGTTTTGTGACTCCACCCTGAGG
GCAAAGACCAGTCTGCCCCTTATGAAGGGAGGTGAGGTGCTTTGCCTATC
TGAGGTCATAGATTGTAGCATTCATTTATCTTGGGGTGATAACATCTTTC
TGGCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATCTACCTTTCTGCTGATTCAC
AGGAACACTTAGCTCAAATGAATTAAGTGACTCTTGTAAACAGGAAAGAA
GGAGAATAAAGTATGGCTTTTGAAAGAAGGAGTAAGATATGGACAGACAC
TAGAGGAGCAATTATGTAAGTAAATGATATGCTTTTCAATCTTAAAAAAG
AAAACCAATAACAGACTACCAAAGGAGGCTATAAACATATCCTGAGAGAT
CTGTAAGTGGGACAGAGGCAGCATCTTTGACATGCTGGCAAAACAGACAC
TTCATCTTCCCTTTTTTTTAACACCTCTCCCCTCCTGACTGTCTAAAATT
GTAAATATTAACGAAGAATGCATACTTTTCACTACTGGAACATTAAAAAG
AAAAAACAAAAGAATTGGTTTCTAAAAGAAAATGATTCAATACCAATTTT
GTTTATAAATTCAGGCTACATAAACCTAATTGACTTTTAAATAAACTAAC
TTGGAGAAGAAAAAGAAAAGCATTCCTTTGATGTAAATTTTTATCTCATT
TGAAGATAATAAGTTTCATTTTGTTTCCATTTGAAAACATTGCCTAATAA
CAAAACTCTACGAGGGAAATTTTATTTAGTTTGATTTTTCTGCAACTTTT
ATATTTAATGAACACAAATACGAGTGTAACTAGAGGATAAGAAAGAGCTT
TTTCCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_g04.b1 MSMg01no279_g04.b1 CHROMAT_FILE:
MSMg01no279_g04.b1 PHD_FILE: MSMg01no279_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:57 2005
         (324 letters)



>mm_chr5_19557205_19557928
          Length = 724

 Score =  603 bits (312), Expect = e-177
 Identities = 321/324 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggccacagctcccaatagtgccactccctgccccaagcatatacaaaccaccacagtcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ggccacagctcccaatagtgccactccctgccccaagcatatacaaaccaccacagtcag 520

                                                                       
Query: 61  tattaaatatttcataaacatgtcctccttaattctgaaaatttcataggtatagtgcag 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 519 tattaaatatttcataaacatgtccttcttaattctgaaaatttcataggtatagtgcag 460

                                                                       
Query: 121 ctggtagcttcctaatatcaaaacaaaaagggtgatcactgagaaagatacaggcactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctggtagcttcctaatatcaaaacaaaaagggtgatcactgagaaagatacaggcactca 400

                                                                       
Query: 181 tctgcctagagcaactcgcaaccattttcctccttatttaaaaaacaggtgtcaagcaga 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 399 tctgcctagagcaactcgcaaccattctcctccttatttaaaaaacaggtgtcaagcaga 340

                                                                       
Query: 241 taatgtgttttgtgactccaccctgagggcaaagaccagtctgccccttatgaagggagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 taatgtgttttgtgactccaccctgagggcaaagaccagtctgccccttatgaagggagg 280

                                   
Query: 301 tgaggtgctttgcctatctgaggt 324
           ||||||||||||||| ||||||||
Sbjct: 279 tgaggtgctttgcctgtctgaggt 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no279_g04.g1 MSMg01no279_g04.g1 CHROMAT_FILE:
MSMg01no279_g04.g1 PHD_FILE: MSMg01no279_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:57 2005
         (297 letters)



>mm_chr5_19398616_19399312
          Length = 697

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatctacctttctgctgattcacaggaacacttagctcaaatgaattaagtgactcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatctacctttctgctgattcacaggaacacttagctcaaatgaattaagtgactcttg 260

                                                                       
Query: 61  taaacaggaaagaaggagaataaagtatggcttttgaaagaaggagtaagatatggacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaacaggaaagaaggagaataaagtatggcttttgaaagaaggagtaagatatggacag 320

                                                                       
Query: 121 acactagaggagcaattatgtaagtaaatgatatgcttttcaatcttaaaaaagaaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactagaggagcaattatgtaagtaaatgatatgcttttcaatcttaaaaaagaaaacc 380

                                                                       
Query: 181 aataacagactaccaaaggaggctataaacatatcctgagagatctgtaagtgggacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataacagactaccaaaggaggctataaacatatcctgagagatctgtaagtgggacaga 440

                                                        
Query: 241 ggcagcatctttgacatgctggcaaaacagacacttcatcttccc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcagcatctttgacatgctggcaaaacagacacttcatcttccc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)