CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAAATACCCCCAGTTCTGTTGTGGCTTGTTGCCTGCATTTATAC
TGAAAGGAAATGCTAAATTTCAGTTAACGGCTAGCAGAAACAAAGATATG
GGGGTTTTCTGTACGGATTGTCCCCCCCTCCGGCTTGCGGAAGATTACGT
CAAGCCCTGAAGCTCCAAGCATCTCCCCCATGCCCTCCTCTCAGCACAGT
AGCCATGCTCCGACCTTAGAAAAGCAAGATGAGGTGCAGGCTGGCCCAAG
GTGAACTTCAGGCAGGGGGACTGAAGGTAAAGTGTTATGCACATGAAAGT
GACAAGGCTCTGGACATAGGGAGAGAAGGTTCTAGAAGGGAGGAAAGCTA
AAGACCAAGGTCAATCAAGTCTCAGTTAAAGTGTGTGGAGAGGGGTGTAC
TCACCATGGAATGGCCAAGAAAGACATTACCCTACTCCACCTCTGCCCTC
TATGACCCCCACCCCACTCTATTCCCCTACAGATACTGGCCACTACTCCC
ATTCCACCACACACACACACACACACACACACACACACACACACTCACAC
ACACACTCACACATCATCATCATCATCATCATCATCATCATCACCACCAC
CACTGCCATCACTGGGACTCCTTGTATCTGATTTTGCTTCGCCAGTTCTA
GCCCGTGGCCTGAAACGACTCCTTGTGGTCCCGCAGTGCCCCGCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTACCCAGAACATTCCTGCCCTG
ATAGTCTTTGAGCCCAATCACCGCCGCATCCTAAACTGGCAGCAGCTGCA
AACAAGCTTGGGTTTTGCCACTGGAGGTTTTGTTTGATTATTTGGATGCG
TGGGTAGGTCAGGTAGTTTTGATTTTTTTTTTTAAAGAAAGGGCCTGTAT
TAGTTACTTATCTGTTGCTGCAACAAAACACCATGGGAGAGACAACTTAC
AGGAGAAGGACTTTATTTCAGCTTATGAGTTCAGAGGGTTAGAGTCCATA
ATGGCAGATCTTATGCCTGCCGCACGGAGTAGAGTTAAGAGCTTAGGCCT
CAAGCCATAAACACAGAACAGAATGAGGGTAAGCACTGGGAATGGCACAA
GGATTTGAAACCTGAGCGCCAGCCTCCAGGAGCATCCTTCCTCCACTCCA
GCATGGCTACACCTCCCAGACCTCCCCAAGGATGGGGAGGGAGGTGTTTC
TCATTCAAACCACTGAAGAACCTCATGTATCAGAGGTTGATCTCAAACCC
CATTATATAGCCAAAGATAACATTGAATTCATCATCCACCTGCCTCTAGC
TCCTGGCACTAGGGTCACAGTGCACATGCCCAGGCAGTTGCCAGTTTTCT
TAATACCAGACTTCTCATTGGCTTTTTGCCTATCTGAAAATT

Query= MSMg01no279_g15.b1 MSMg01no279_g15.b1 CHROMAT_FILE:
MSMg01no279_g15.b1 PHD_FILE: MSMg01no279_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:59 2005
         (683 letters)



>mm_chr5_52638471_52639553
          Length = 1083

 Score = 1222 bits (632), Expect = 0.0
 Identities = 670/684 (97%), Gaps = 6/684 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataaatacccccagttctgttgtggcttgttgcctgcatttatactgaaaggaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattcataaatacccccagttctgttgtggcttgttgcctgcatttatactgaaaggaa 753

                                                                       
Query: 65  atgctaaatttcagttaacggctagcagaaacaaagatatgggggttttctgtacggatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 atgctaaatttcagttaacggctagcagaaacaaagatatgggggttttctgtacggatt 693

                                                                       
Query: 125 gtccccccctccggcttgcggaagattacgtcaagccctgaagctccaagcatctccccc 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 692 gtccccccctccggcttgcggaagattacatcaagccctgaagctccaagcgtctccccc 633

                                                                       
Query: 185 atgccctcctctcagcacagtagccatgctccgaccttagaaaagcaagatgaggtgcag 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 632 atgccctcctctcagcacagtagccatgctctgaccttagaaaagcaagatgaggtgcag 573

                                                                       
Query: 245 gctggcccaaggtgaacttcaggcagggggactgaaggtaaagtgttatgcacatgaaag 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gctggcccaaggtggacttcaggcagggggactgaaggtaaagtgttatgcacatgaaag 513

                                                                       
Query: 305 tgacaaggctctggacatagggagagaaggttctagaagggaggaaagctaaagaccaag 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 512 tgacaaggctctggacatagggagagaaggttctagaagggaagaaagctaaagaccaag 453

                                                                       
Query: 365 gtcaatcaagtctcagttaaagtgtgtggagaggggtgtactcaccatggaatggccaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtcaatcaagtctcagttaaagtgtgtggagaggggtgtactcaccatggaatggccaag 393

                                                                       
Query: 425 aaagacattaccctactccacctctgccctctatgacccccaccccactctattccccta 484
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 392 aaagacattaccctactccacctctgccctctacgacccccaccccactctattccccta 333

                                                                       
Query: 485 cagatactggccactactcccattccaccacacacacacacacacacacacacacacaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cagatactggccactactcccattccaccacacacacacacacacacacacacacacaca 273

                                                                       
Query: 545 cacactcacacacacactca-ca-catcatcatcatcatcatcatca---tcatcatcac 599
           ||||| |||||||||| ||| || |||||||||||||||||||| ||   ||||||||||
Sbjct: 272 cacacacacacacaca-tcatcatcatcatcatcatcatcatcaccaccatcatcatcac 214

                                                                       
Query: 600 caccaccactgccatcactgggactccttgtatctgattttgcttcgccagttctagccc 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 caccaccactgccatcactgggactccttgtatctgattttgcttcgccagttctagccc 154

                                   
Query: 660 gtggcctgaaacgactccttgtgg 683
           ||||||||||||||||||||||||
Sbjct: 153 gtggcctgaaacgactccttgtgg 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)