Query= MSMg01no280_j12.b1 MSMg01no280_j12.b1 CHROMAT_FILE:
MSMg01no280_j12.b1 PHD_FILE: MSMg01no280_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:28 2005
(321 letters)
>mm_chr5_60507149_60507869
Length = 721
Score = 561 bits (290), Expect = e-164
Identities = 314/322 (97%), Gaps = 2/322 (0%)
Strand = Plus / Plus
Query: 1 gtgttccttcttcatctttcaaagaacactgattaatcagctggactaaaatttcaattt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gtgttccttcttcatctttcaaagaacactgattaatcagctggactaaaatttcagttt 260
Query: 61 atatttcattataatgtttccattatagattttccactttgtatgcagattttgcagaat 120
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 261 atatttcattataatgtttcctttatagattttctactttgtatgcagattttgcagaat 320
Query: 121 ctctcatggcctgagccagcctgttgactttcacaaagtgaatctcccacatatcaccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcatggcctgagccagcctgttgactttcacaaagtgaatctcccacatatcaccct 380
Query: 181 ttttcccttcagcatagagcacacagtgccccctcagagggcaccagaacaatggaaggt 240
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 381 ttttcccttcagcatagagcacacactgccccctcagagggcaccataacaatggaaggt 440
Query: 241 ggaacattaagcacgaag-ttgctttatacacacatgacaatgaaatttgactctgatat 299
|||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ggaacattaagcac-aaggttgctttatacacacatgccaatgaaatttgactctgatat 499
Query: 300 gtgaccctcactctacttataa 321
||||||||||||||||||||||
Sbjct: 500 gtgaccctcactctacttataa 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_j12.g1 MSMg01no280_j12.g1 CHROMAT_FILE:
MSMg01no280_j12.g1 PHD_FILE: MSMg01no280_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:28 2005
(239 letters)
>mm_chr5_60667392_60668024
Length = 633
Score = 373 bits (193), Expect = e-108
Identities = 223/239 (93%), Gaps = 12/239 (5%)
Strand = Plus / Minus
Query: 1 gttgaatattttctcagaactattaaaattatatatatatatatataccctaatttatgt 60
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 474 gttgaatattttctcagaactattaaaat------tatatatatataccctaatttaggt 421
Query: 61 gatttttgatttatgcatctctttctaataacgcagatattaattttgtctagacaatgc 120
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 420 gatttttgatttatgcaactctttctaataatgcagatattaattttgtctagacaatgc 361
Query: 121 caaaatttcaaatatagaataacggtatatgcttgcttagatttttagcttaaaaaaatt 180
||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 360 caaaatttcaaatatagaataacggtata----tgcttaggtttttagctt--aaaaatt 307
Query: 181 aaaatccttcattggtataaaattcaagcaactaaaaagaattcagtaaatggtaatat 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaatccttcattggtataaaattcaagcaactaaaaagaattcagtaaatggtaatat 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 633
Length adjustment: 9
Effective length of query: 230
Effective length of database: 624
Effective search space: 143520
Effective search space used: 143520
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
