BAC Information

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BAC

Clone NameMSMg01-280L08
Chromosome5 (Build37)
Map Location 133,091,900 - 133,092,136
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2, 4930563F08Rik
Downstream geneLOC100039731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280L08.T7 (MSMg01no280_l08.b1)MSMg01-280L08.TJ (MSMg01no280_l08.g1)
ACCAG417733AG417734
length758760
length of high quality
(start - end)
239 (130 - 368)237 (133 - 369)
definitionCHROMAT_FILE: MSMg01no280_l08.b1 PHD_FILE: MSMg01no280_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:37 2005CHROMAT_FILE: MSMg01no280_l08.g1 PHD_FILE: MSMg01no280_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAACTCATTTCCCGAGTACTCTACCTCCTGCTCCCAGCTCATGCA
TAATCCATCTCTCCATTAAATTTTACCAATAAAGCACGCGACCTATGGGT
TGTAGATGAGACTCAGTTGGGAGAGGGCTCACCTAGCATACACAAACTCA
TGGGTTTGATCCCAGCAGCACACAAACTGATTATGGTAACACATGATGTC
ATACCGTACCCTGCTTCTCTGCTTGGGGTGCCTGGAGTGGCACCTGCATG
CCACCAGAAGAAGGCAGGGCCAAGTCCAACGTGGGGAGTTCACAGTGGTT
CCTGGTCACTTCTCTGTTTTTTGGAGTGACATTGCCAAAGCACTGTGAGA
GGGAATTGGGAACTGAGGATCCACAGGTCTGCATGTCAAGCAAAGAGGGG
AAAGGTGGAGAACGTTGGTGGATGCTGGTTTGATTCAGAGTCGGTGCTGA
GAGTGCTGGGGGCTGAAGGAGAGACCTTCCTCCGGAGTTCTGGGCACAGT
TCTTTAAGGCCTTCCTGGTGGTGATCCTTATTTAAGAAACAATCCTTGCT
TATTCATATTAGTGTATTTTGATGGTGAATATGAATTCATACCCTTTATT
CATGGTGAACCATGAATTAAATGTCTTTTTCAGGAAGGAATGCCCAACAA
GGGAAGCTCATTGGCTGAACACTTGGCGGCTATCTAGATACCTCATCAGC
ATGGAGAA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACAGTATTACCTTTGACCAGA
GAAACTCATTCACAGCCCATGATTTTCATCGAGGCATGCTACCTGCTAGC
TTGCTCAGACTCATTCTAGGACCACATACTTAGGTACTGGGCCCTCCCAA
TACCAATAAGCAATTAAAAAAAAAGAAAGAAAGAAAAACCCACAGACATG
CTCACAGGCAAGAATGATCTGGAAAATCTCTCAATTGAGACTCCCTTCTC
AGGGGACTGTGTCAAGTTAACAATTAAGCTAACTAGATGACTCCTGGTAT
ATGCATAAAATTTTGTTTGTAGGTTCCATTGCCCACCCCCACCATATAAA
CAGCGGATCTAATGTGATAGCTCATCATATAAACAAAAAAAAACAGAACT
GGGAACAAGGCCGGGTATGACTGCACATACCTTCACTCCTAGCACTTGGA
AGGCAGAGGCAGGTAGATCTATGACTGTAAAGCCAGCCTGGTCTACACAG
ATAATGGTTCTTCCTTTGTCCTCTTTTGGCTCTCTACATATCTGAGAACT
TTATTGCTATAATCTACTTACATGTCTCTCTCCTGCACTGGACAGCTAGC
TTCTGTACTCCAACACCCTTTTCACTCTTTCCTTGCATTATTAACAGGGC
AGCACTAAAAACATCACACACACACACACCCATATACATACACGTATATA
TACACACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_l08.b1 MSMg01no280_l08.b1 CHROMAT_FILE:
MSMg01no280_l08.b1 PHD_FILE: MSMg01no280_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:37 2005
         (239 letters)



>mm_chr5_133091584_133092222
          Length = 639

 Score =  420 bits (217), Expect = e-122
 Identities = 232/237 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagcacgcgacctatgggttgtagatgagactcagttgggagagggctcacctagcat 60
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 553 taaagcacgggacctatgggttgtggatgagactcagttgggagagggctcacctagcat 494

                                                                       
Query: 61  acacaaactcatgggtttgatcccagcagcacacaaactgattatggtaacacatgatgt 120
           |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 493 acacaaactcgtgggtttgatcccagcagcacataaactgattatggtaacacatgatgt 434

                                                                       
Query: 121 cataccgtaccctgcttctctgcttggggtgcctggagtggcacctgcatgccaccagaa 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cataccgcaccctgcttctctgcttggggtgcctggagtggcacctgcatgccaccagaa 374

                                                                    
Query: 181 gaaggcagggccaagtccaacgtggggagttcacagtggttcctggtcacttctctg 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaaggcagggccaagtccaacgtggggagttcacagtggttcctggtcacttctctg 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)