BAC Information

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BAC

Clone NameMSMg01-288D04
Chromosome5 (Build37)
Map Location 89,343,600 - 89,343,909
singlet/doubletsinglet
Overlap geneSlc4a4
Upstream geneCsn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1
Downstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288D04.T7 (MSMg01no288_d04.b1)MSMg01-288D04.TJ (MSMg01no288_d04.g1)
ACCAG418090AG418091
length766564
length of high quality
(start - end)
310 (392 - 701)100 (126 - 225)
definitionCHROMAT_FILE: MSMg01no288_d04.b1 PHD_FILE: MSMg01no288_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:13 2005CHROMAT_FILE: MSMg01no288_d04.g1 PHD_FILE: MSMg01no288_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTACCTAGCCCACGCCACCCTTGAACTTGTGAGAATCTTCATGT
CTTATCCCTTTGAGTGTTGAGAGCACACCCATGTGCTATCGTACCTGACC
TAACTTTAAACAGTTGTTTCTGGGGGCTCTTATGAGTGTGTGCCTTTCTG
TGGGTCACATGGCGAAAAATCAAGAAAGAGATCTCCCTGCGTGGACAGAG
TCTTTGTGAAGCCTCCATTCATGTACTGGAGATCTGGTCACTGGAGGCCT
GCTGGTGTTTGAGCCAGGACATTGGGGGAGGTACTTGAATCAACAGTGGG
ATCACTGCTCTTATGAGAATATATTTGTGGACACACTCTTTTGTGCTCTG
GGGTTCACAGTGAGAACAGAGTCATCTGCACACCTGGAAGAAGACCCATA
CCAGCACCCGCATTGGCCAGTGATCCTGGATTTTCCATGCATACTCCAGA
ACTAGGAGGAGTTATGGTTGTTGGCTTAAGTGTCCATCCCACGGGAACTG
TTCTACCAGCCTGAGTTGCTCATCTCTGTTTCCCTCTCAGTGCCCACTCT
GGCTTTCTCAGATGGCGCCCTTGCGACTGCTTCCTTGGTGTTTAGATGTC
AGCCGCTTCCCTTGATGATGCCCCTTGGGTCTCTGGGTTTTGCTGACTGC
GGAGGAAGAGAGCCGAGCTTTGGGTGCTCCCTGTGCCACACACGAGGAGT
CGTAAAAGTGCCTTCN
TGATGGTAGCTGGGGCGCCTGGCTTCCTTTAGGAATATAAAGACTTGCAT
CCAAATTACGAAATTGGAAAACTTCCTGCCACTCTAATCAAATACTCCTT
CTTAAAATGATGAAATGGAACCTGAGCTACTCATGCTTGAATTTCCACAT
GGGGAATTCTTAACTACCAGAGGCAAGCTACTGACTATATTGAAATTCTA
TTTTTAAAATTATCAGCAGAATTAAAGAAATCAAATTTATAATCCTGATA
ATAACAAAATAGAAAATTTATAGAAACTAAAAAAATCGAATCTTTATGAG
ATCTAAAATTATTTATATCCATAACAAAGGAAGAGTCTANAAAAACAAAA
AAGTTTAAAAAAAAACCATTGTTTTTACCCCNNNNTTGTCCATGGGCGGC
CCCCCNNNNNTCTCCCAACCGGGTTTAAAAAAAAAAAAAATTTTTAAAAG
GAAAAGAGAAAAAAAACCGGGGGTTTTTGGGAAGCGCTGTNNAAAGACCA
AAGAAAGGGGGGGGCCCAAATAATGCGCAAAAAGTTGCTTTTTTTAAAAG
GTGGTGTGTTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_d04.b1 MSMg01no288_d04.b1 CHROMAT_FILE:
MSMg01no288_d04.b1 PHD_FILE: MSMg01no288_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:13 2005
         (310 letters)



>mm_chr5_89343400_89344109
          Length = 710

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgctctggggttcacagtgagaacagagtcatctgcacacctggaagaagacccatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tgtgctctggggttcacagtgagaacagagtcatctgcacacctggaagaagatccatac 260

                                                                       
Query: 61  cagcacccgcattggccagtgatcctggattttccatgcatactccagaactaggaggag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcacccgcattggccagtaatcctggattttccatgcatactccagaactaggaggag 320

                                                                       
Query: 121 ttatggttgttggcttaagtgtccatcccacgggaactgttctaccagcctgagttgctc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ttatggttgttggcttaagtgtccatctcacgggaactgttctaccagcctgagttgctc 380

                                                                       
Query: 181 atctctgtttccctctcagtgcccactctggctttctcagatggcgcccttgcgactgct 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctctgttcccctctcagtgcccactctggctttctcagatggcgcccttgcgactgct 440

                                                                       
Query: 241 tccttggtgtttagatgtcagccgcttcccttgatgatgccccttgggtctctgggtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttggtgtttagatgtcagccgcttcccttgatgatgccccttgggtctctgggtttt 500

                     
Query: 301 gctgactgcg 310
           ||||||||||
Sbjct: 501 gctgactgcg 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)