BAC Information

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BAC

Clone NameMSMg01-288E12
Chromosome5 (Build37)
Map Location 132,619,384 - 132,619,695
singlet/doubletsinglet
Overlap geneAuts2
Upstream geneWbscr17, 4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288E12.T7 (MSMg01no288_e12.b1)MSMg01-288E12.TJ (MSMg01no288_e12.g1)
ACCAG418148AG418149
length734722
length of high quality
(start - end)		318 (47 - 364)---
definitionCHROMAT_FILE: MSMg01no288_e12.b1 PHD_FILE: MSMg01no288_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:20 2005CHROMAT_FILE: MSMg01no288_e12.g1 PHD_FILE: MSMg01no288_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTCATCATCAAACATAATATATATAGTCTGTAGATACATATAC
ATGAATATCTAAGATTCTATCTTTAGCATTTAGGAGATATCAATAGAAAG
GTGAGCAGTTCAGGGTCATCCTTGAGGACATACAGAATTAAAATTCAGCC
TGGGCTATGTTGCACCCTGCCTTGAAAAGAGAAAAGACCTCAGATTTAAA
TATAAATTAGCTTTCAAAAATCATGATTCAGCATGTATCACACTCTAAGT
TCATGGCCTCTGATTAAGAGGAAATACCTTGCAATGTATTTTAAAAGTCT
GTGTTTGTATTTCGCTACTCTTACCTNTCCATCGCCCTGGTCTAAGTCTA
TTTGTAGAACCACAGTTGCCCCCCCACTAATGAACTGACTCGGCTCTGGA
TTGAGCTGACAGCTCAGTTTCTGCTTTCTCTCCAGCTCTGTTCCCTTAGT
TGGATTATAGGCCGCATGCCCTATACTAGCAAGCTCATAGGGTTGTTAAG
CGGGAGGACTGGGTTGATAAAAATCAAGATTTGGAATCTTGGCGGGTGTT
TGTGTTTCTTGGATGTTAGATAACATAGAATAGAACCGTGCCTTGTTTCC
TATAGCTTGTAGAGGATGCTAAGTTTCCTTAGTTTGTCTTGAGCATTTGG
TTGTATTGTAGCTAGTAAAACAATGCCCTACTTT

ACGATGAAGTGGGAGGCCTGGCGGCCGCCTGGTTTCGGACGTGAGGNGAA
CNANAGAAGTTACGCAAGAACGAGAANAAANCANACNACACACACACATA
CACACACACACACACACCCCCCCAGAGAGGCGGGCACGGANAAACGGAGG
CAAAAGGACAGAACCAAGACACCAGAAGGACCANNCNNACGGGGGCAGGG
AGGCNNAAANCCANAACCCAAGCACCGCGGAGACGGACGAAAGCGGGGTT
ATAGCNCAGCCAANAAAGGGCCGGACACGCCACCGGAAACCCAGGGCACC
ANCCCAAGGAATGTTTTTTGTTTACACAGCAGCACACACCGGGGANCCNA
GAGTTTTTTTTTTTCCCCCCCCCCCCCCCAAGGNNANCANNCNCAGGGAG
GNCGAGACNCCCCCCCCACACNGAGCNAAAGAGGGGGACCGCNNGGGGAA
AAGAATAAAGAAAGAAGTGAGTGGCCATCCCAAAAGTTTCCCATAGACCT
GCGTCTGGGAAAAAACCATGAATTTTCAAACAGGCATGAGTGACACGCTG
CTCATAATTTTTACGCATTAGCCAAACGCCGACGGCCGGGGAGAACGCAT
TATTCACACAGGGTGCACGTTTGGCCATGGAAAGGGTGAGGGGGTATGTT
GTTTTTTTTTCTAACGTGCCCGGCCAGCTGGAATAAATTATTGGCACCCG
AACGTGTATGCCCGGACGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_e12.b1 MSMg01no288_e12.b1 CHROMAT_FILE:
MSMg01no288_e12.b1 PHD_FILE: MSMg01no288_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:20 2005
         (318 letters)



>mm_chr5_132618995_132619713
          Length = 719

 Score =  549 bits (284), Expect = e-161
 Identities = 305/314 (97%), Gaps = 5/314 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtcatcatcaaacataatatatatagtctgtagatacatatacatgaatatc 63
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ggaattcagtcatcatcaaagataatatatatagtctgtagatacatatacatgaatatc 642

                                                                       
Query: 64  taagattctatctttagcatttaggagatatcaatagaaaggtgagcagttcagggtcat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 taagattctatctttagcatttaggagatatcaatagaaaggtgagcagttcagggtcat 582

                                                                       
Query: 124 ccttgaggacatacagaattaaaattcagcctgggctatgttgcaccctgccttgaaaag 183
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 581 ccttgaggacatacagaattaaaattcagcctgggctatgtggcaccctgccttgaaaaa 522

                                                                       
Query: 184 agaaaagacctcagatttaaatataaattagctttcaaaaatcatgattcagcatgtatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 agaaaagacctcagatttaaatataaattagctttcaaaaatcatgattcagcatgtatc 462

                                                                       
Query: 244 acactctaagttcatggcctctgattaagaggaaa---taccttgcaatgtattttaaaa 300
           ||||||||||||||||| ||||||||||||  |||   ||||||||||||||||||||||
Sbjct: 461 acactctaagttcatgggctctgattaaga--aaaaaataccttgcaatgtattttaaaa 404

                         
Query: 301 gtctgtgtttgtat 314
           ||||||||||||||
Sbjct: 403 gtctgtgtttgtat 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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