BAC Information

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BAC

Clone NameMSMg01-288P16
Chromosome5 (Build37)
Map Location 27,782,674 - 27,782,960
singlet/doubletsinglet
Overlap geneDpp6
Upstream gene4930584F24Rik, B930011P16Rik
Downstream geneSpeer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288P16.T7 (MSMg01no288_p16.b1)MSMg01-288P16.TJ (MSMg01no288_p16.g1)
ACCAG418658AG418659
length762755
length of high quality
(start - end)
248 (76 - 323)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no288_p16.b1 PHD_FILE: MSMg01no288_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:12 2005CHROMAT_FILE: MSMg01no288_p16.g1 PHD_FILE: MSMg01no288_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATACTGCTTAATTTTAGATCTAAAGAAAATATGTATATCTCCC
AACCCACAGCTTCAGGATCATTAAGACAGAAAGAATGGTAAGAACCAAAA
AGCCAGAGGCAGTGGACGCCCATAAGGAAACAGTGTCTCTTAGACACCCC
AGGGAAGCTATATCTATGAACGCACAGTCGTTGTGATGGTGTGCACAAGA
TCTTGTAAACCTAAGCCAGATCACACTCTGGTGTGGAGGGGGGAAGAGGG
AGAGGAAGTCTTCTTTAAGGTGTATTTTTTTTGTGCCCATCACACTCCAG
TGGAAGGCCACACCTTTTATTTTTTGACCCCCTCCCCCTGGCCTTGATGG
GGGGACAAACCCCTATAGAACCGCCGAAGGAAAAAAAAAAAGATGGAGCT
AGAGGACTTACAAGAGGTGGGTGAATGTGATTGAAACTCACTGTATGGAA
TTCTCAAAGAATTATATAACACCCTTTAATAAACTCTGCTTCCACATTGG
ATGAGAAATAACTAGAGTAGATCTTCTTGTTCTTGGCCTTTGAGGATGCA
TTAAAATGTGCCAGTGTGCACGGTTCTGGCCATGTTTTGCCTCGCACAGA
CTGGTCTGCGTTACTTGATTTTACTCCAATTCTGGTTAACAGTATTTAAT
GCCCTACCATCCACTTTTGTGACCTTTTTTTATAAAATTTCTTTGCTTCC
TTCTATTCACTG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAACTCTTCTCAGATAAAGAATCA
GAGAATAGCCATGAACAGAACCCCAGCTTCATCCTTATACACCATCCTGG
TGGTTCTGCAGGGCTGTCTCAGGAGAGTTGGCCGAGGTGGCATGTTGTTA
GATTTTAGGAATGAAAATGAGAAGTGGCAGGTTCAAGAGGAGGCACTGAG
AGTCGTTAGGGGAGAATTAACAGTGTGCACAGTGCTGTGGAGTTCTGAAG
ACAGAGAGGAGGAGGAGAGAGAGAAGGAGAGAAACAGAGAACCTTCTACT
CGAAGAGAGATAGCATTGATTTTCTGCTTTCCCCCGCCCCTGAGGGCGGG
GGTGTTCTTACTATGAAGTTGCACCATAGTCAGGTGAACTCTGACTCCCA
GGTAGTAGGAGAAACAGGGGCTTGTGTGTCAGTGACAGGGTCCCAGCAGA
TGTTGTGTCCACTTCTGGCAGCAGGTTGGAGGGCAGCAAGGCCTCAGGCA
TGCGGCTATGTCCACGAGGCTCTGGCATCTGTCGTCTGACTTCTGCCATG
TGCACACTCATTCTGCGCCCCTTTATTCGTGAGACTAGTGCAAGGCTTGT
GTGTCATTTAAGTTGCGCCAGACAGTTAGGAGGAAGCCTGGAAACACCTA
TGTACATTTGGAGCTGCTCTGGGGGAGTTTTCACTAGTAAACAGCCTGAA
GGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_p16.g1 MSMg01no288_p16.g1 CHROMAT_FILE:
MSMg01no288_p16.g1 PHD_FILE: MSMg01no288_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:12 2005
         (292 letters)



>mm_chr5_27782474_27783165
          Length = 692

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%), Gaps = 2/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taactcttctcagataaagaatcagagaatagccatgaacagaaccccagcttcatcctt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 taactcttctcagataaagaatcagagaatagccgtgaacagaaccccagcttcatcctt 260

                                                                       
Query: 61  atacaccatcctggtggttctgcagggctgtctcaggagagttggccgaggtggcatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacaccatcctggtggttctgcagggctgtctcaggagagttggccgaggtggcatgtt 320

                                                                       
Query: 121 gttagattttaggaatgaaaatgagaagtggcaggttcaagaggaggcactgagagtcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttagattttaggaatgaaaatgagaagtggcaggttcaagaggaggcactgagagtcgt 380

                                                                       
Query: 181 taggggagaattaacagtgtgcacagtgctgtggagttctgaagacagagaggaggagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggggagaattaacagtgtgcacagtgctgtggagttctgaagacagagaggaggagga 440

                                                            
Query: 241 gagagagaaggagagaaacagagaaccttctactcgaagagagatagca 289
           |||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct: 441 gagagagaaggagagaaacagagaaccttccactc-aa-agagatagca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)