ACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCACTAATTATTTAAAAGCTTTCTTACAGTACTACAGCGAA
ACGACCGGTTACAAACCTTTCATTTTCGTTCGAACACCGTACTCTAACCA
ATGGATATTTTGTGAATACTTCTATTCAGTATCTCTAGATTTTTAAAAAA
AAAAACCCAAATGTAAAGAAAGACATTACCAAATGAGTGGTTCATCAGTG
AAATAATTTGTTTTGCCTTTACATTTTAGCCTTTTTGGAAGGCACATTAT
TTGCAGTATACACAGATATAAATTTTGTACATTTAAAATAGCCTGTATAG
CCTTTTTGTCGTTCTTTCTTGTTTTCCCCTCCCACTCTGAAGATTCTTTC
GCTTCTATTAATTTTAAGTCTGGTTAAAAAAATAGTGCTTGAGGCCAGCC
TGGTCTACAGAGTGAGTTCCAGGACAGCCATGGTTAAAAGAGAAACCCTG
TCTCAAAAAAACCAAAACAAACAAAAAAAATAGTGCTTAAATTAAACATA
AAAACAATTAGCATTTACATTTGAATAATGCTTCTTCATGTTTATTACCA
TGTACATTACTAGGAACTGGAAGTCCAACCTTGTAAAAAATTAAAATTCA
AGACAGGCCTTTATAGTGAGGTTATTGTCTTTTCATTATAACTCATTTTT
TACAGCCAGCTAATTTTCCAGAGGGAATTACTGTTCCTATCTTTAGTCAA
TTTGGN

CCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACATCTTCATCTGACTTCAGCC
AAAAGAAAACTAATTCTTCTGCACTGGGTAGAGCTTCAAAGTCTACCCCC
ACAGTGACATACTTCCACCAACAAGGCCACACTGCCTAAGAGTATCACTC
CCTATGGGCCAAGCATATTCCAACCACCACATGACACTAATTTTGTTAAC
TATATTAAAAAATTTTCAAGATTATTCACATAGTAGACAGCTAAGAATAT
ATAATGTTTGAAACTTCAGATATACCATAGATAGATAGTTGGTCTTCAAA
AACTTCAAAGATCACAGAATATGGCATTTGAAATTATTTTTATTACTAAA
GACAAAATAACGTTTGCCTTTTCACTATGAGACAAGTCAGCTCCTGACAA
TATCCCTATTCCATTTCAAAAAAATGATGAACATCAATAACCTCCAGTTA
CAATTGCTTCAATTATGATAAGCTAGGCACTGGGCAAAGAAAATGTCCAT
GATTCAACTACAGAGAAATCTGTCCAGAAAGGACAAATGGACACAGGGAA
GTCAATAGCCAATCTCCACCAAGACAGGGTAAGCAAGTCCTTCATAAATC
CTGCTTCACATAAGATCTGTCAGATATTCTGAGCAAGAGGGCTGAGTGAA
GATAGATGTCCCAATATTACAGAGACNATACTGGGGACTGTCTTGGCAAT
CAGN

Query= MSMg01no288_p20.b1 MSMg01no288_p20.b1 CHROMAT_FILE:
MSMg01no288_p20.b1 PHD_FILE: MSMg01no288_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:12 2005
         (700 letters)



>mm_chr5_25036100_25037199
          Length = 1100

 Score = 1295 bits (670), Expect = 0.0
 Identities = 691/702 (98%), Gaps = 9/702 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgcactaattatttaaaagctttcttacagtactacagcgaaacgaccggtta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctgcactaattatttaaaagctttcttacagtactacagcgaaacgaccggtta 262

                                                                       
Query: 64  caaacctttcattttcgttcgaacaccgtactctaaccaatggatattttgtgaatactt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caaacctttcattttcgttcgaacaccgtactctaaccaatggatattttgtgaatactt 322

                                                                       
Query: 124 ctattcagtatctctagatttttaaaaaaaaaaacccaaatgtaaagaaagacattacca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctattcagtatctctagatttttaaaaaaaaaaacccaaatgtaaagaaagacattacca 382

                                                                       
Query: 184 aatgagtggttcatcagtgaaataatttgttttgcctttacattttagcctttttggaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatgagtggttcatcagtgaaataatttgttttgcctttacattttagcctttttggaag 442

                                                                       
Query: 244 gcacattatttgcagtatacacagatataaattttgtacatttaaaatagcctgtatagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcacattatttgcagtatacacagatataaattttgtacatttaaaatagcctgtatagc 502

                                                                       
Query: 304 ctttttgtcgttctttcttgtttt---cccctcccactctgaagattctttcgcttctat 360
           ||||||||||||||||||||       |||||||||||||||||||||||||||||||||
Sbjct: 503 ctttttgtcgttctttcttg----aagcccctcccactctgaagattctttcgcttctat 558

                                                                       
Query: 361 taattttaagtctggttaaaaaaatagtgcttgaggccagcctggtctacagagtgagtt 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 559 taattttaagtctggttaaaaaaatagtgcttgaggccatcctggtctacagagtgagtt 618

                                                                       
Query: 421 ccaggacagccatggttaaaagagaaaccctgtctcaaaaaaaccaaaacaaacaaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccaggacagccatggttaaaagagaaaccctgtctcaaaaaaaccaaaacaaacaaaaaa 678

                                                                       
Query: 481 aa--tagtgcttaaattaaacataaaaacaattagcatttacatttgaataatgcttctt 538
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaaatagtgcttaaattaaacataaaaacaattagcatttacatttgaataatgcttctt 738

                                                                       
Query: 539 catgtttattaccatgtacattactaggaactggaagtccaaccttgtaaaaaattaaaa 598
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 739 catgtttattaccatgtacattactaggaactggaagtccaatcttgtaaaaaattaaaa 798

                                                                       
Query: 599 ttcaagacaggcctttatagtgaggttattgtcttttcattataactcattttttacagc 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttcaagacaggcctttatagtgaggttattgtcttttcattataactcattttttacagc 858

                                                     
Query: 659 cagctaattttccagagggaattactgttcctatctttagtc 700
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 cagctaattttccagagggaattactgttcctatctttagtc 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)