Query= MSMg01no289_a07.b1 MSMg01no289_a07.b1 CHROMAT_FILE:
MSMg01no289_a07.b1 PHD_FILE: MSMg01no289_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:15 2005
(670 letters)
>mm_chr5_75446672_75447738
Length = 1067
Score = 944 bits (488), Expect = 0.0
Identities = 556/588 (94%), Gaps = 22/588 (3%)
Strand = Plus / Minus
Query: 5 gaattctcagtatttcccagtgagctaggtctctgggccatgctcatggacctctgtatt 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattctcagtatttcagagtgagctaggtctctgggccatgctcatggacctctgtatt 510
Query: 65 taaccacattactgaccatggttctaacaattataatgtaattgtgtcagctctctccag 124
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 509 taaccacaggactgaccatggttctaacaattataatgtaattgtgtcagctgtctccag 450
Query: 125 tagaacgccatgctctgtgaagacaggggctgatggtgagacaagtcaaccaacatggag 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tagaatgccatgctctgtgaagacaggggctgatggtgagacaagtcaaccaacatggag 390
Query: 185 atggtatcaatcaagctacaatggtcaaagactcctccagccaagaaaagtaaactctta 244
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atggt----atcaagctacaatggtcaaagactcctccagccaagaaaagtaaactctta 334
Query: 245 tcaaggatcaatataatttaaaacatacagctattagttcacgtttcttaatgacagttt 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 333 tcaaggatcaatataatttaaaacatacagctactagttcacgtttcttaatgacagttt 274
Query: 305 acctgtggtacaactgccaggtaaaaccatgcatctttaaaacttgttagtcccaaa-tt 363
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 273 acctgtggtacaactgctaggtaaaaccatgcatctttaaaacttgttagtcccaaattt 214
Query: 364 tttttaaaaccccccttaa--aatcacaacaacaacagcagcagcaacagcagcaacatt 421
||||||||| || || || || | || || |||||||||||||||||||
Sbjct: 213 tttttaaaa--------aaggaa----aa-aa-atca-caacagcaacagcagcaacatt 169
Query: 422 tcacagaaaggaaaagaacaatatgaaaacagctcaaggaatacatgaaggggtaaaata 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tcacagaaaggaaaagaacaatatgaaaacagctcaaggaatacatgaaggggtaaaata 109
Query: 482 tccctggggagggaaaaacacggagttttattgaagaaaccaagcagagactggtctgca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tccctggggagggaaaaacacggagttttattgaagaaaccaagcagagactggtctgca 49
Query: 542 caggaaagtgtgtctgggagtcaactgaaggaccttaaagtagggatc 589
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 caggaaagtgtgtctgggagtcaactgaaggaccttaaagtagggatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1067
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1057
Effective search space: 697620
Effective search space used: 697620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_a07.g1 MSMg01no289_a07.g1 CHROMAT_FILE:
MSMg01no289_a07.g1 PHD_FILE: MSMg01no289_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:15 2005
(342 letters)
>mm_chr5_75280408_75281148
Length = 741
Score = 491 bits (254), Expect = e-143
Identities = 275/282 (97%), Gaps = 1/282 (0%)
Strand = Plus / Plus
Query: 60 tgggctctgattgtaaaagtggggaatagagagagagctgatctgagcaacagtctcacc 119
|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 260 tgggctctgattataaaagtggggaacggggagagagctgatctgagcaacagtctcacc 319
Query: 120 cttcctggcctgctgtgtaatgtgagctgagctgctctgctgtgccttccctgcatcatg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttcctggcctgctgtgtaatgtgagctgagctgctctgctgtgccttccctgcatcatg 379
Query: 180 gactgaagtctctgaaacctaagcccaaataaaccgtgatgaccgcaatgcaaatttcag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gactgaagtctctgaaacctaagcccaaataaaccgtgatgaccgcaatgcaaatttcag 439
Query: 240 tcttgtacaaccaagcgtttgagaacatttttgtacctcttccttctgctgtatctgtct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 440 tcttgtacaaccaagcgtttgagaacatttttgtacctcttccttctgctgtagc-gtct 498
Query: 300 gccatagtcaaccacacacagccactcgaacacaaaggctgg 341
||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 499 gccatagtcaaccacacacggccactcgaacacaaaggctgg 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space: 243756
Effective search space used: 243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
