BAC Information

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BAC

Clone NameMSMg01-289H21
Chromosome5 (Build37)
Map Location 99,437,397 - 99,437,633
singlet/doubletsinglet
Overlap genePrkg2
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3
Downstream geneLOC100041680, Rasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289H21.T7 (MSMg01no289_h21.b1)MSMg01-289H21.TJ (MSMg01no289_h21.g1)
ACCAG419028AG419029
length718740
length of high quality
(start - end)
239 (130 - 368)54 (133 - 186)
definitionCHROMAT_FILE: MSMg01no289_h21.b1 PHD_FILE: MSMg01no289_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:49 2005CHROMAT_FILE: MSMg01no289_h21.g1 PHD_FILE: MSMg01no289_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTGGGAGATGCGAATATGTAACAGGCTCTGTGTTTGTGTGCGT
TATGACGTCATTGATAACATTTCTCACAGCTAGAACTCAAGATAAATGTC
AAGCATGCTGCACCAGGCCATGCAAATATGGCTTCCTCCACGGCCAGGGC
CATGAGGTGGCTCTCGATTCCAATGGCAGATTCTTTTATATTTTTATTGT
TTCAATATTCTAATCATGTCTTTATTTACCGCCTTAGCTTTCAAGCTCCA
AACCTTCTTAGAAGAAATAGAAGTAAACAAGTACATATTATTTTCCTTTA
TTATATACATATCTTACTTTATGTTGTGAAATAACCGCTATGTGATTTAT
ATGATTGTATATATATTTATACCCACATATACATATATATGTGTGTGTAT
GCATACACACATATATACATACATATATATGGTTTGTGTTTATTTTTGTA
ACTTCACTTTCAGTCTCATTGAAATTTATATTTTGGGGGTTTTTTGCCTT
TATTAAAAATAGGTATTTTTCTCATATAATATATCCTGATTTAGGTTTCC
CCTTCCTCTACAGCGTGTGCTGTTTGGAGGTTCCCATGGGACCCCTTTGA
ACAATTCGATATAACCCATTCCCAGNACTGGATGCTTCATTTGGTGACGA
GAAATGGTCAGTTGGGCN
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCCAAAATTCTTCTGATGATCTCAGATATGAGATAA
TTACAAGTTAAATAATATTTCTTTCAACTGCAATGTGTGTGTGTGTGTAT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNTNNNNNNTNNTTTNN
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTNTNTNTTTTTTTTTTTT
TTTTTTTTTTTNTTTTNNNTTTTTNTTTTTTTTTTTTTTTTTTTTNNNNN
NNNNNNNNNNNNNTTTTTTTTTTTTTTNNNNNNNNNNNNNNNTNNNNNNN
NNNNTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCACAAAAAACAAAAAA
ATATTATTTTTCCCCCCCTTTTTTAAAAAAAAAAATNTTTCTTGCTAGTT
CTTTTACAATTATTCTCTTTTCCTTCTTCTAACACTACCTTCTACTTATC
TTCTCTTACTAATATATTTACAATTACACATATTATTTTTCATTCTTACT
TCTCCTACCTTCTCCTCCATACCTAATCATATAATATACTCATTGGTGTG
CTTTCCTCCCCTCCCTATCACCTCCCTCACCTCTCTCTATTCCCCAATTA
TCTCTTCTTATATCTCTTTTTTTTCTTTTTTTTCTTGCCACAATACTCCC
TACTATATCATCTCATTTTAATCTTTTATTCATTCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_h21.b1 MSMg01no289_h21.b1 CHROMAT_FILE:
MSMg01no289_h21.b1 PHD_FILE: MSMg01no289_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:49 2005
         (239 letters)



>mm_chr5_99437197_99437834
          Length = 638

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%), Gaps = 1/238 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaactcaagataaatgtcaagcatgctgcaccaggccatgcaaatatggcttcctcc 60
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctagaactc-tgataaatgtcaagcatgctgcaccaggccatgcaaatatggcttcctcc 379

                                                                       
Query: 61  acggccagggccatgaggtggctctcgattccaatggcagattcttttatatttttattg 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acggccagggccatgaggtagctctcgattccaatggcagattcttttatatttttattg 319

                                                                       
Query: 121 tttcaatattctaatcatgtctttatttaccgccttagctttcaagctccaaaccttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tttcaatattctaatcatgtctttatttaccgccttagctttcaagctccaaaccttctt 259

                                                                     
Query: 181 agaagaaatagaagtaaacaagtacatattattttcctttattatatacatatcttac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agaagaaatagaagtaaacaagtacatattattttcctttattatatacatatcttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space:   144670
Effective search space used:   144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)