BAC Information

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BAC

Clone NameMSMg01-289J14
Chromosome5 (Build37)
Map Location 35,682,652 - 35,841,473
singlet/doubletdoublet
Overlap geneHmx1
Upstream geneRnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c
Downstream geneCpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289J14.T7 (MSMg01no289_j14.b1)MSMg01-289J14.TJ (MSMg01no289_j14.g1)
ACCAG419107AG419108
length753723
length of high quality
(start - end)
237 (127 - 363)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no289_j14.b1 PHD_FILE: MSMg01no289_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:56 2005CHROMAT_FILE: MSMg01no289_j14.g1 PHD_FILE: MSMg01no289_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,841,240 - 35,841,473)(35,682,652 - 35,682,938)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGACGCTGTCGCTTCAGTTTCGAGCTGCATATTCGGAAGGTGCT
GTAAGGTCCAACAAAGGCTCCCCCCCTTGCTATCCCTCTGTTTCCAGTCC
TAGGCAGGCCACTGCTCTCTGCTTTCCACTCCTACGGGTGGGCATCTCAC
ATGTTTCCTTCTTTGTCCTCCTGGGCTGTAGCTGAGGAGAAACCCTGAGA
CAGGAAATGGACACAGGATGCTTTCTCCAGCTTGGGGCAGGCCTTCTACA
GGAACAGTGGGCTTCTGTCATCCTCTTTACTCCTGTGGGGGAGGTGACGG
TCAGAGGACCTTTTATTGTTTACCCGCCCCCAGCTCCTAAGAGGCTCCCC
TGAAGACCACCCTGCCCCCCCCCCTTGATAAAAAGAAATCTGTCCTCAGA
AAAGTGGACTGAAACTCCAGCCCCAGGACTCACAAATGTGACCCACAGAG
GGGAGCAGGGATCTCCAGCGTGGGGCCTTTACGGGGCCCCTCCCCTCCCT
TTCTCTCCCCTTTTTTATTCTTCACTTCTTCTTCTTCTCTATTTTTCTCC
TCTCTTTCTCTCTATAAACTACTTATAATAATTACTCCTAAATATCTTCT
CTGCCCTATAGTACATGTTTTTTATTAACTTACCCCCGTTTTATTCATAT
TACTCTATCTAACAATAACCTTTACTATCATAATCTTATTTTATTTATTT
CAT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGGAGGGAGTGGCCACTTAGCCTGA
GGAGGGAGACACTAGGGGGAGAACCCCCCTCAGGCCCATGGCCTGTCCTG
CTACCCCTTTTTCTTCTTCGGGGCTCAGGCATATGTATGTGGAGAAGGCC
TGGGTGTGCATATATGTGTGCAGGCGTGTTTGCCATTGCAAACATGTATG
GATGCCAGAGGTTGGGCTTCTTCCTCTATTGGATTCCACCTTTTACATTT
AATCTGCATGTGCAGAAACACATGTCTTGGCACACATGTGGAGGTCAGAT
AACATATTTCATTAGTTATTACTCGCCCCCCCCCCGAAAGAGCTACTTAC
TGTCTTTCTTGTGGCCCCCCCCCCGGAGACTGTAACAGGCTCTCTGGCCG
CTGAGTGTCTAAGCAATCCTCCCGTGTCTGGCTCCTTCTCACTGCAAGAA
TGCTGGAGTTATAGGCGCAAACCACTACAACTAGCTTCTTTGGTGGTTTC
CAGAGGCTGAACTTGGGTCTCAAGGCTTGAACTTTTCCTACTGAGCCATA
ATATTTTTTGAGACAGGTTTTCTCACGGAGCACGGAGCTCAGCACTTTCG
CTAGTCTAGCTGGCCAGTGTGCACCTGGAAACCCTCCTGTCTCTGCTCCC
TTCCACACCTGGGATTACAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_j14.b1 MSMg01no289_j14.b1 CHROMAT_FILE:
MSMg01no289_j14.b1 PHD_FILE: MSMg01no289_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:56 2005
         (237 letters)



>mm_chr5_35841040_35841676
          Length = 637

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgctatccctctgtttccagtcctaggcaggccactgctctctgctttccactcctacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttgctatccctctgtttccagtcctaggcaggccactgctctctgctttccactcctacg 375

                                                                       
Query: 61  ggtgggcatctcacatgtttccttctttgtcctcctgggctgtagctgaggagaaaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggtgggcatctcacatgtttccttctttgtcctcctgggctgtagctgaggagaaaccct 315

                                                                       
Query: 121 gagacaggaaatggacacaggatgctttctccagcttggggcaggccttctacaggaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gagacaggaaatggacacaggatgctttctccagcttggggcaggccttctacaggaaca 255

                                                                 
Query: 181 gtgggcttctgtcatcctctttactcctgtgggggaggtgacggtcagaggacc 234
           |||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 254 gtgggcttctgtcagccactttactcctgtgggggaggtgagggtcagaggacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no289_j14.g1 MSMg01no289_j14.g1 CHROMAT_FILE:
MSMg01no289_j14.g1 PHD_FILE: MSMg01no289_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:57 2005
         (291 letters)



>mm_chr5_35682452_35683142
          Length = 691

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggagggagtggccacttagcctgaggagggagacactagggggagaacccccctcagg 60
           |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggagggagcggccacttagcctaaggagggagacactagggggagaacccccctcagg 260

                                                                       
Query: 61  cccatggcctgtcctgctacccctttttcttcttcggggctcaggcatatgtatgtggag 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccgtggcctgtcctgctacccctttttcttcttcggggctcaggcatatgtatgtggag 320

                                                                       
Query: 121 aaggcctgggtgtgcatatatgtgtgcaggcgtgtttgccattgcaaacatgtatggatg 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 aaggcctgggtgtgcatatatgtgtgcaggcatgtttgccattgcaaacatgtatggatg 380

                                                                       
Query: 181 ccagaggttgggcttcttcctctattggattccaccttttacatttaatctgcatgtgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagaggttgggcttcttcctctattggattccaccttttacatttaatctgcatgtgca 440

                                                          
Query: 241 gaaacacatgtcttggcacacatgtggaggtcagataacatatttca 287
           |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaacacatgtcatggcacacatgtggaggtcagataacatatttca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)