BAC Information

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BAC

Clone NameMSMg01-289L14
Chromosome5 (Build37)
Map Location 35,926,065 - 35,926,345
singlet/doubletsinglet
Overlap geneAcox3
Upstream geneAdd1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik
Downstream geneHtra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289L14.T7 (MSMg01no289_l14.b1)MSMg01-289L14.TJ (MSMg01no289_l14.g1)
ACCAG419200AG419201
length718717
length of high quality
(start - end)
322 (48 - 369)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no289_l14.b1 PHD_FILE: MSMg01no289_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:05 2005CHROMAT_FILE: MSMg01no289_l14.g1 PHD_FILE: MSMg01no289_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACT
TCATTACCATGACCCGCAGTTCTGGCCCCGGAATGAAGGATCTTCCTTGC
GCCGGTGATGGTAACCGTCCCAGGTTTTTCTCATCCCAGGATTTCTCGTC
CCAGGTCTTCTCGTCCCAGGTTTTCTCGTCCCAGGTCTTCTCGTCCCGTC
CCGGGTTTTCTCGTCCCGGGATTTCTCGTCCTGGGTCTTCTCGTCCCGGG
TTTCGGCACCAACTCTTACAAGCGTTCGTGCGACCGGCCAGGAAAGACGC
AGCAAACCGGAATCTTCTTTTTTTAACCCCCCCCCGCTTACATCTTCAGG
AGCAAGAGAGCAAGAGTTTTTCCCCCCCCCAACAAAGCAAGAGAATGANG
GAGCGGAGAACAAGAGAGAGAGAAAGAATGGCAAAACCCCGTCCCTTTTA
AGGAGAATTATCCTCTGCCTAGGACGTATTACTCCCTGATTGGCTGCAGC
CCATCGGCCCAGTTGTCATCATGAGAAAGGCAGAACACATGGCGGGAAAA
CTGCCCCTGCACGTGCGCAGATTATGTTTACTACTTAGAACACAGCTGTC
AGCGCCATCTTATAATGGCTAATGTGAGGGCGGCTCCCCACACAGAAGAG
AGCTCATGATTTCATTAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGGAAGTGCGCTACCGCTGAT
CTACACCTGAAACCTTAGTTCTCCGCCTGAGTCTCAGTTGATCCGGCTGC
CCTCGAACGCTATCCTCCTGACTCAGTCTTGGCATCATGGGTCAGTCCAT
TATGCCAACATAACACTGACTCTTAAAAGCGGGACCTAGAAGAGGAACAG
AAACAAGGTCAGGTCATCTGCTACTTTGTTGTAAGACTGAAGCAGGAAGG
AAATCCTTACCGTAAGGTCAGGTGTTTTTTTTCTCCCAGGTGTCCTGAAA
GTTTCAGNCTGATTTCAGCTGGCTTCANGNACANGANCCTATGTTGGTTG
GGTCTGGTCTGTAGAGGACCTCCCCCCAAANCTTATTTCAAAAACTAGGG
GGGGGGGGGTTTTTTATTTTGAATAGACTAAAGGACTGGAGGAAAGTTGT
GTCAAAACAGTGATAATGAAACTGTCATTTACCTCAGGAACATCACAAGT
GCCTGATTTGAGTCCCAGGAACGTGGCAGACACTGCCCCGTGTGCAGAGT
TATCGTTGCTTCTGAGAAACGGGATCAAAGCAGGTCGGTAATGTTACAGA
AATTGGCAAACTGTATTTATGAGGAAGCTTGGCTCCGTTGCGCTTTGTTT
GTTTGATCTGCACCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_l14.g1 MSMg01no289_l14.g1 CHROMAT_FILE:
MSMg01no289_l14.g1 PHD_FILE: MSMg01no289_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:06 2005
         (283 letters)



>mm_chr5_35925865_35926547
          Length = 683

 Score =  484 bits (250), Expect = e-141
 Identities = 273/286 (95%), Gaps = 10/286 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaggaagtgcgctaccgctgatctacacctgaaaccttagttctccgcctgagtctca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 ttaaggaagtgcgctaccgctgatctacacctgaaaccttagttctccgtttgagtctca 260

                                                                       
Query: 61  gttgatccggctgccctcgaacgctatcctcctgactcagtcttggcatcatgggtcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgatccggctgccctcgaacgctatcctcctgactcagtcttggcatcatgggtcagt 320

                                                                       
Query: 121 ccattatgccaacataacactgactcttaaaagcgggacctagaagaggaacagaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattatgccaacataacactgactcttaaaagcgggacctagaagaggaacagaaacaa 380

                                                                       
Query: 181 ggtcaggtcatctgctactttgttgtaagactgaagcaggaaggaaatccttaccgtaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcaggtcatctgctactttgttgtaagactgaagcaggaaggaaatccttaccgtaag 440

                                                         
Query: 241 gtcaggtgtt-----ttttttctcccaggtgtcctgaaagtttcag 281
           |||||||| |     |     |||||||||||||||||||||||||
Sbjct: 441 gtcaggtggtaccaat-----ctcccaggtgtcctgaaagtttcag 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)