BAC Information

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BAC

Clone NameMSMg01-289L18
Chromosome5 (Build37)
Map Location 93,673,994 - 93,674,281
singlet/doubletsinglet
Overlap genenone
Upstream genePpef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik
Downstream geneCcng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289L18.T7 (MSMg01no289_l18.b1)MSMg01-289L18.TJ (MSMg01no289_l18.g1)
ACCAG419207AG419208
length728731
length of high quality
(start - end)
318 (45 - 362)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no289_l18.b1 PHD_FILE: MSMg01no289_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:06 2005CHROMAT_FILE: MSMg01no289_l18.g1 PHD_FILE: MSMg01no289_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAATTTTCTTTGTCTCCGCCCCCCACGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTACCCCCACGAGATAAATATGGATCGATTCTCA
TTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCT
CTGTAGTAAAGCTTTAGGTCAGGCATGATGATTCCACCAGAGGTTCTTTT
ATCCTTGAGAAGACTTTTTGCTATCCTA
GAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAAGGCAATTCCACTAGTGCATAA
ACCAACTGCTCTGAGGAAAATGTGTCAAGACAAATTCCATAGAAATGAGC
CCGCTGCTGCACCCCTCTTACTGTGAGATGCTGCTACTAGGAGGTGTGGC
CTTGTTGGAGTAGATGTGGCCTTGTTGGAGGAAGTTCATCACTATGGGGG
TGGGCTTTGAGGTCTAATGCTCAAACTCACATCTCAAGTATGGATGAAAG
TCTCCTTCTGGCTCCCTTTGGATCAAAATGTAAAATTCTTGATTCCTCCA
GAACCATAGACTGCTTGGTCTTTGCCCCCCCCCCCACCATGGCAATAAGA
GACTGAGCCTCTGAAACTGCCACCCACCCCCAAAAAAATGCTTTCCTTTA
TAAGAGTTGCCTTGTTTGTTTACAGCAATAAAACCCTGAGACATCATCTA
GCAAAGGCAAAATGAGCTACCCAATGCACTGATTAACTGCCTCCTTTGGT
GGGTACTTTATCACTGTTCAAAGTCATGCATGTGGAATTATTTGCAATTG
TTCACTCGATTAAACTGTACACTGGGTGGATTACCATCTGTCTTCATTAC
TTTTCTGTTGCTGTGATAAAATACCATGACCAGAAATGACTTATGGAAGA
ANAGGTTTATTTTAATGCCAAGAGGATAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_l18.g1 MSMg01no289_l18.g1 CHROMAT_FILE:
MSMg01no289_l18.g1 PHD_FILE: MSMg01no289_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:06 2005
         (288 letters)



>mm_chr5_93673794_93674481
          Length = 688

 Score =  511 bits (264), Expect = e-149
 Identities = 282/288 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaggcaattccactagtgcataaaccaactgctctgaggaaaatgtgtcaagacaaat 60
           ||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||
Sbjct: 201 agaaggcaattccactagtgcataaaccaactgctccaaggaaaatgtgccaagacaaat 260

                                                                       
Query: 61  tccatagaaatgagcccgctgctgcacccctcttactgtgagatgctgctactaggaggt 120
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tccatagaaatgagccctctgctgcacccctctcactgtgagatgctgctactaggaggt 320

                                                                       
Query: 121 gtggccttgttggagtagatgtggccttgttggaggaagttcatcactatgggggtgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggccttgttggagtagatgtggccttgttggaggaagttcatcactatgggggtgggc 380

                                                                       
Query: 181 tttgaggtctaatgctcaaactcacatctcaagtatggatgaaagtctccttctggctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tttgaggtctaatgctcaaactcacatctcaagtatggatgaaagtctccttctgactcc 440

                                                           
Query: 241 ctttggatcaaaatgtaaaattcttgattcctccagaaccatagactg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttggatcaaaatgtaaaattcttgattcctccagaaccatagactg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)