Query= MSMg01no289_m05.b1 MSMg01no289_m05.b1 CHROMAT_FILE:
MSMg01no289_m05.b1 PHD_FILE: MSMg01no289_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:08 2005
(318 letters)
>mm_chr5_33505970_33506688
Length = 719
Score = 503 bits (260), Expect = e-147
Identities = 300/314 (95%), Gaps = 3/314 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactcaggtagcctgcttgtgccttctttgacttctttgaacatctctatagtc 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattcactcagg-agtctgcttgtgccttctttgacttctttgaacatctctatagtc 458
Query: 64 attctcttgtttttgccttcgagtttcacttaagttgctctcattgagggatagaatggg 123
||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 457 attctcttggttttgttttcgagtttcacttaagttactctcattgagggatagaatggg 398
Query: 124 a--tttttttttaaaattgggatctaccagcacagaatttaatcattgattaagttcacc 181
| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 397 attttttttttttaaattgggatctactagcacagaatttaatcattgattaagttcacc 338
Query: 182 ttgtttctgtggaagagttcctggtgctcagaagagactaagttgtaattgtgtggagat 241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttgtttctgtggaagagttcctgatgctcagaagagactaagttgtaattgtgtggagat 278
Query: 242 ggtatttccagagagttgattactgcctgcaacaatcgtctcaatccagcaataaactca 301
||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 277 ggtattttcagagagttgattactgcctgcaacaatcgtcccaattcagcaataaactca 218
Query: 302 ctgtggaaatagag 315
||||||||||||||
Sbjct: 217 ctgtggaaatagag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space: 219390
Effective search space used: 219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_m05.g1 MSMg01no289_m05.g1 CHROMAT_FILE:
MSMg01no289_m05.g1 PHD_FILE: MSMg01no289_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:08 2005
(290 letters)
>mm_chr5_33363823_33364512
Length = 690
Score = 536 bits (277), Expect = e-157
Identities = 286/289 (98%), Gaps = 1/289 (0%)
Strand = Plus / Plus
Query: 1 tagtaaacttatattgtttgctttaatttttccccttttagatagggcctcatgcatctc 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 202 tagtaaacttatattgtttgctttaatttttccccttttagatagggtttcatgcatctc 261
Query: 61 aggctggcctcaaacacattaaatagatgaggttggccttgaactcccgatgctgcggcc 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 262 aggctggcctcaaacacattaa-tagatgaggttggccttgaactcccgatgctgcggcc 320
Query: 121 ttaactgtcaaatgctgggctcactggtgcgaaccaccgtgcctagcttatctcggggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaactgtcaaatgctgggctcactggtgcgaaccaccgtgcctagcttatctcggggtg 380
Query: 181 aatgtggccttgctttcaggcaattgaaaggcaggtaagtatgtagttctagagagtgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtggccttgctttcaggcaattgaaaggcaggtaagtatgtagttctagagagtgaa 440
Query: 241 acaagacactggctggatgggatgatctgaggccattgttctgactttg 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaagacactggctggatgggatgatctgaggccattgttctgactttg 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
