ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGTAACATGTCTTGTGATAGCCTCCAGGACCTGGAGACAGGTT
GGTGTGAGATTTTTTTCCATTTGCTCTTAGAGCCTAACAGGTAGGGAGCA
GTAATGTTTGTTGAGTGAATAATCGATTGTAAATCCTTTCTTGACCCCTT
AGGCTAGTAGATGGTGAGAATGAGATAAAGCATGTGGTTCCTGACTGACG
ACAAAGAGGGACACAGAAATAGTGAGGACATGTCCAGCATCTCTGCCAGC
TAGCACCAGGCCAAGTGAGTGATCCCCCTTAGGCCTCAGGGCCATTTTTG
TCTGGGCTTTGTTCCTCTGCCCGCCCCCATCATAGGAGGGCCGGAGGGCC
GGTGAGGTGTCCCCACCCCTTTGAAGACAATGATGAATGATAATGGCAGG
CATCAAGGGTGGTTGTCACCAGGGGTGGCCCAGAGTCGGGGCATGGTGGC
TCATGTGGAACTGAGGCCAAAGGATCATTGGTTCAATGTCATCTTTGGCT
ACATAGTGAGTTCAAGGCCAGCCTGGGCTATATGACTTTCTCCCCTCCCC
CCCCCTTCGCTCTCTCTCTTTGGGTCTTCGAGACAGGGTTTCTCTGTGTA
GCCTTGGCTGTCCTGGAACTCCCTCTGTAAACCAGGTTGGTCTCAAACTC
ATAGACTCTCCAGCCTTCTGCCTCCCCA

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCACCGGTGAGGNG
ACACTATAGAATTTCAAAAGACAATCCATAGCCAGATGCACTTGCTGCCA
CGCCAGCTGTGGCTCGTTTCCCCCCCTGGAGTTACATATTCCCTGTTAGG
TCTCAGAGGGCACCACAGAGAAGGGAATTATTGGACATCATGGAGAGGAT
CGCGGGGGGATCCAAGCCGGGGACACGGAGCACAGCTAGGTCCTAGATCT
CTTTTGCTACTCAATGTCTGTGTTGTTATTAAACTTTATAACTGTGGTGA
CTGGCATTAAGCTAGATTACATCCTTGTAGCCTAGGTTAGCCTCAAATTT
ATAACCTTTTTTTTTTATCCCCCTCCCCGCTGGGCCCAAAAAGAAGAGTG
GCACCTAAATTTTCCCCACAATTAAATAAAATCATTCTGGCCCGTGGGTG
AGTGTGTCCCTGGCTCAGGGGATAGCCCTCCCTAGGCGCCTTTGTCTGGC
TGTTTTGTCTTTCTCTTTCCCATCAAGCTATGACCAAGTTAGAGGACAGT
GGCTCTAGGCTTGACACATACATGCAGGTGGAGACGTGGGGAGCAGTCAA
GTGACAAGTTAGGGACATAATACTTGGGTTTCACCAATACTGTCAGTGAT
CTTTTTTTTTCTGCTGATGTCTCTGGGCCTCAGTTTATAACCCAATGCAA
CGAGGGCAGCATTAGCACCCCCCAG

Query= MSMg01no289_o16.b1 MSMg01no289_o16.b1 CHROMAT_FILE:
MSMg01no289_o16.b1 PHD_FILE: MSMg01no289_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:19 2005
         (314 letters)



>mm_chr5_125693395_125694108
          Length = 714

 Score =  582 bits (301), Expect = e-171
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtaacatgtcttgtgatagcctccaggacctggagacaggttggtgtgagat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggaattctgtaacatgtcttgtgatagcctccaggacctggagacaggttggtgtgagat 449

                                                                       
Query: 64  ttttttccatttgctcttagagcctaacaggtagggagcagtaatgtttgttgagtgaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttttttccatttgctcttagagcctaacaggtagggagcagtaatgtttgttgagtgaat 389

                                                                       
Query: 124 aatcgattgtaaatcctttcttgaccccttaggctagtagatggtgagaatgagataaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aatcgattgtaaatcctttcttgaccccttaggctagtagatggtgagaatgagataaag 329

                                                                       
Query: 184 catgtggttcctgactgacgacaaagagggacacagaaatagtgaggacatgtccagcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 328 catgtggttcctgactgacgacaaagagggacacagaaatagtgaggacatgtccagcac 269

                                                                       
Query: 244 ctctgccagctagcaccaggccaagtgagtgatcccccttaggcctcagggccatttttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctctgccagctagcaccaggccaagtgagtgatcccccttaggcctcagggccatttttg 209

                
Query: 304 tctgg 308
           |||||
Sbjct: 208 tctgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no289_o16.g1 MSMg01no289_o16.g1 CHROMAT_FILE:
MSMg01no289_o16.g1 PHD_FILE: MSMg01no289_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:19 2005
         (240 letters)



>mm_chr5_125512812_125513451
          Length = 640

 Score =  402 bits (208), Expect = e-117
 Identities = 232/240 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatagccagatgcacttgctgccacgccagctgtggctcgtttccccccctggagttac 60
           |||||||||||||||||||||||||||||||||||||||||  ||||   ||||||||||
Sbjct: 201 ccatagccagatgcacttgctgccacgccagctgtggctcgggtcccaggctggagttac 260

                                                                       
Query: 61  atattccctgttaggtctcagagggcaccacagagaagggaattattggacatcatggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattccctgttaggtctcagagggcaccacagagaagggaattattggacatcatggag 320

                                                                       
Query: 121 aggatcgcggggggatccaagccggggacacggagcacagctaggtcctagatctctttt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 321 aggatggcggggggatccaagccggggacacggagcacagctaggtcctagatctcaatt 380

                                                                       
Query: 181 gctactcaatgtctgtgttgttattaaactttataactgtggtgactggcattaagctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctactcaatgtctgtgttgttattaaactttataactgtggtgactggcattaagctag 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)