TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTCCTTCCCAATTCATTATGGTTGGTGCTTTTGTTCACATGTGC
CTGTCAAATATGGGTTTTGTATACCGATTAAAGACATCATTGGAAACAAG
CCACTAAGGACAGAAATCTGAATACAAATGAACATCAACAAATCCCACTG
TGTTTTTTAGCCCCTACTAATTGCTTCAGAGTTGTCATTTTTGTTTGTTT
GTTTGTCCTATTCACGTTTTATCTAAATGTATACATCCCTAGGGATGTTC
TGTCAACACACTTAGCCTGGCAATTTTCACTACAGGAATTATAACAGTAG
CCAAATATCTCAAACTCAATAAACCATTATAAGTTTATGGTTGCTAAGCT
GGAGACATAGTTAGATATTTTATAAACTATCATACTCAGTACACTCAAAC
TAATCTCACAAATACATCCTCAACATACATTAGTAGCTAACTATTAATTG
TATTACCTATTATCTAAAATCAAGTTTACCCAAGAAAATCAACCTTGCTT
TATCCATATACTTGAATATAATTAATTTTGAGAGTTTATACTAGTTTCCT
CATTCCCTTTCATGAAACAAATTAATTAGGCAGAAATAAAGTAAACAAAC
TAGTCCATGATTACCAACACAATAAATGTGGGAAGGGTCAGTCTATGGAG
TCTCAGTCAAGTCTTTTTTTTTTTTTTTGGATTCTTTTTTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAACAGACTGGGAG
GAAGAAGCAGCCCATTACCAGCCACCTAATTGGTCAAGAAAAAAGCCAAA
AGCGGCTGGCGAAAGCCAGCGTACTGTTCAACCTCCGGGCAGTCGGTTTC
AAGGTCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCAATGC
GCAGAGAGGCAATGCGCAGAGAGGCAATGCGCAGAGAGGCAATGCGCAGA
GAGGCAATGCGCAGAGAGGCAGTGCGCAGAGAGGCAGTGCGCAGAGAGGC
AGTGCGCAGAGAGGCAGTGTGCAGACTCATTCATTCCCAGAGAGGAACAA
AGGAAAATACAACAGGCATTTCCAGTCTTTGAAGGAGCCGAGGGTGGGCG
TGTCCACGCTCCGGTAGAATACGTACAGATTAAAGAACTCGCCGAGTCGG
TCCGTAAATACGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGG
CTCGCCGGCATGGCACTAACTCCTGCTGACTGGCAAACGATTGTAAAAGC
CGCTCTCCCTAGTATGGGCAAATATATGGAATGGAGAGCGCTTTGGCACG
AAGCTGCACAAGCGCAGGCCCGAACAAACGCAGCTGCTTTGACTCCAGAG
CAGAGAGATTGGACTTTTGACTTGTTAACGGGTCAGGGAGCTTATTCTGC

Query= MSMg01no290_a05.b1 MSMg01no290_a05.b1 CHROMAT_FILE:
MSMg01no290_a05.b1 PHD_FILE: MSMg01no290_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:26 2005
         (661 letters)



>mm_chr5_55951159_55952221
          Length = 1063

 Score = 1220 bits (631), Expect = 0.0
 Identities = 650/659 (98%), Gaps = 6/659 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattatggttggtgcttttgttcacatgtgcctgtcaaatatgggttttgtataccgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattatggttggtgcttttgttcacatgtgcctgtcaaatatgggttttgtataccgatt 260

                                                                       
Query: 61  aaagacatcattggaaacaagccactaaggacagaaatctgaatacaaatgaacatcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagacatcattggaaacaagccactaaggacagaaatctgaatacaaatgaacatcaac 320

                                                                       
Query: 121 aaatcccactgtgttttttagcccctactaattgcttcagagttgtcatttttgtttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatcccactgtgttttttagcccctactaattgcttcagagttgtcatttttgtttgtt 380

                                                                       
Query: 181 tgtttgt----cctattcacgttttatctaaatgtatacatccctagggatgttctgtca 236
           |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttgtttgtcctattcacgttttatctaaatgtatacatccctagggatgttctgtca 440

                                                                       
Query: 237 acacacttagcctggcaattttcactacaggaattataacagtagccaaatatctcaaac 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacttagcctggcaattttcactacaggaattataacagtagccaaatatctcaaac 500

                                                                       
Query: 297 tcaataaaccattataagtttatggttgctaagctggagacatagttagatattttataa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaataaaccattataagtttatggttgctaagctggagacatagttagatattttataa 560

                                                                       
Query: 357 actatcatactcagtacactcaaactaatctcacaaatacatcctcaacatacattagta 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 actatcatactcagtacactcaaactaatctcacaaatacatcctcaacatacattaata 620

                                                                       
Query: 417 gctaactattaattgtattacctattatctaaaatcaagtttacccaagaaaatcaacct 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctaactattaattgtattacctattatctaaaatcaagtttacccaagaaaatcaacct 680

                                                                       
Query: 477 tgctttatccatatacttgaatataattaattttgagagtttatactagtttcctcattc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctttatccatatacttgaatataattaattttgagagtttatactagtttcctcattc 740

                                                                       
Query: 537 cctttcatgaaacaaattaattaggcagaaataaagtaaacaaactagtccatgattacc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctttcatgaaacaaattaattaggcagaaataaagtaaacaaactagtccatgattacc 800

                                                                      
Query: 597 aacacaataaatgtgggaagggtcagtctatggagtctcagtcaagtcttttttttttt 655
           ||||||||||||||| |||| ||||||||||||||||||||||  ||||||||||||||
Sbjct: 801 aacacaataaatgtgtgaagagtcagtctatggagtctcagtc--gtcttttttttttt 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1063
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1053
Effective search space:   685503
Effective search space used:   685503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)