Query= MSMg01no290_a19.b1 MSMg01no290_a19.b1 CHROMAT_FILE:
MSMg01no290_a19.b1 PHD_FILE: MSMg01no290_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:29 2005
(678 letters)
>mm_chr5_49703490_49704567
Length = 1078
Score = 1261 bits (652), Expect = 0.0
Identities = 673/682 (98%), Gaps = 4/682 (0%)
Strand = Plus / Minus
Query: 1 acaaagataaatgctacatatgtcatgggtatcaaatttacaagcgagtgaaagataaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 acaaagataaatgctacatatgtcatgggtatcaaatttacaagcgagtgaaagataaat 952
Query: 61 aaactaagaatctctttgtcattgtgcata----tgtgtgtgtgtgtgtgtatctgtgtg 116
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 951 aaactaagaatctctttgtcattgtgcatatgtgtgtgtgtgtgtgtgtgtatctgtgtg 892
Query: 117 catgtgtgtgtgttatattgcaataagcagtagagtgaaaataaaacagagaaaaggata 176
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 891 catgtgtgtgtgttatattacaataagcagtagagtgtaaataaaacagagaaaaggata 832
Query: 177 gaaaagttatagaacaaagatctcatttttaaagagtctgttctccgaaagcatcactgg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gaaaagttatagaacaaagatctcatttttaaagagtctgttctccgaaagcatcactgg 772
Query: 237 aaagctgactacagttaatacttgaggaagatagacaatgggactagagatgctcttaaa 296
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aaagctgactacagttaagacctgaggaagatagacaatgggactagagatgctcttaaa 712
Query: 297 tagggaactttggcagagaaactccaggagcataatctaagaaaagaatacactggggtt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tagggaactttggcagagaaactccaggagcataatctaagaaaagaatacactggggtt 652
Query: 357 tctacagacatagtctgtctatataaactacatgcaacaggtccctggcagacaagtaat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tctacagacatagtctgtctatataaactacatgcaacaggtccctggcagacaagtaat 592
Query: 417 gtgagtgaggtaaataccctttctctgaaaggaatgggtggtcactaggagacaagcaca 476
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gtgagtgagataaataccctttctctgaaaggaatgggtggtcactaggagacaagcaca 532
Query: 477 agtgtggcatgattagagagccctttaacaatattgcctgttgcagtaacaatggactca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 agtgtggcatgattagagagccctttaacaatattgcctgttgcagtaacaatggactca 472
Query: 537 tggtgataagagcagaagcagtaatcatagctaagagttctctgcaagaaaatggcataa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tggtgataagagcagaagcagtaatcatagctaagagttctctgcaagaaaatggcataa 412
Query: 597 attctgagactgtcataggaagtgtttattaataatgaactataaatattattgattgat 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 attctgagactgtcataggaagtgtttattaataatgaactataaatattattgattgat 352
Query: 657 taggtgtacagtaaagaagaca 678
||||||||||||||||||||||
Sbjct: 351 taggtgtacagtaaagaagaca 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_a19.g1 MSMg01no290_a19.g1 CHROMAT_FILE:
MSMg01no290_a19.g1 PHD_FILE: MSMg01no290_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:29 2005
(674 letters)
>mm_chr5_49535680_49536753
Length = 1074
Score = 1239 bits (641), Expect = 0.0
Identities = 665/673 (98%)
Strand = Plus / Plus
Query: 1 tctcctctcatttaatctatgccattcttgtgtctatttcatgttatttgcctttccttc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tctcctctcatttaatctatgccattcttgtgtctatttcatgttatttgactttccttc 260
Query: 61 cctaatcagattatgttctttgggactatttccctgtgttattttacatataaaaattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 cctaatcagattatgttctttgggactatttccctgtgttattttacatataacaattta 320
Query: 121 ccattcttctctagggggaagattgatgcttgtttccataaatcagcaaatactgtaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattcttctctagggggaagattgatgcttgtttccataaatcagcaaatactgtaagt 380
Query: 181 gaaaataggattcccagaatatcttcatagatactaagttgaactttgtctcatttgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaataggattcccagaatatcttcatagatactaagttgaactttgtctcatttgata 440
Query: 241 ctctgatatgcactgccctgacctcgagccattgggtcatcccatttacaaaatgcactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgatatgcactgccctgacctcgagccattgggtcatcccatttacaaaatgcactc 500
Query: 301 tgcatctgattttcaggttacttcatgtgcacctttaccatagcgtctatgaaaggacct 360
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcatctgattttgagattacttcatgtgcacctttaccatagcgtctatgaaaggacct 560
Query: 361 tagataaaatgaaccaagtatggcttttgcaactgaaccttattaaattttaaagtatat 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagatgaaatgaaccaagtatggcttttgcaactgaaccttattaaattttaaagtatat 620
Query: 421 ccataagtatataagttcctattatggatcaacgctcagaaaataaatattcacaaatac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccataagtatataagttcctattatggatcaacgctcagaaaataaatattcacaaatac 680
Query: 481 agctcattttacagaaccacggactcagagttatctaagcaaaataagcttagcacttac 540
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 681 agctcattttacagaaccacggattcagagttatctaagcaaaacaagcttagcacttac 740
Query: 541 taccacttaagtttaattatttctaaagtgagaaggctgtagtaatactaaaaaaacact 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 taccacttaagtttaattatttctaaattgagaaggctgtagtaatactaaaaaaacact 800
Query: 601 tctgttttgttttgttttaacatcagaaaatcctggaggagactgacagcaaacacagct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctgttttgttttgttttaacatcagaaaatcctggaggagactgacagcaaacacagct 860
Query: 661 cttattcacagta 673
|||||||||||||
Sbjct: 861 cttattcacagta 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
