BAC Information

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BAC

Clone NameMSMg01-290E20
Chromosome5 (Build37)
Map Location 46,146,112 - 46,146,440
singlet/doubletsinglet
Overlap geneLcorl
Upstream geneLdb2, LOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290E20.T7 (MSMg01no290_e20.b1)MSMg01-290E20.TJ (MSMg01no290_e20.g1)
ACCAG419618AG419619
length756756
length of high quality
(start - end)
329 (390 - 718)364 (390 - 753)
definitionCHROMAT_FILE: MSMg01no290_e20.b1 PHD_FILE: MSMg01no290_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:48 2005CHROMAT_FILE: MSMg01no290_e20.g1 PHD_FILE: MSMg01no290_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAAATGATTTCAGCATTAGGAAGGTTAAGAACCTTCTAGCCAGG
CGTGGTGGCGCACACCTTTGTATCCCCGCACTCGGGAGGCAGAGGCAGGC
GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACA
CCAGGTTTCGAGAAACCCTGTCTCGAAAAACCAAAAAAAAGAAAAAAACA
AAAAACAAAAAACAAAAACACTGTTCTAAAGGATCTCTGGTGCCATCTGC
TGAGTGACTTTTTAAGGAAGACCATGGAGGGGAAAGTATAAAATTTTCAT
TTAATCTTTTTAAAATTAATTTTTCATCACCCCCCCCCTATTTATATTTC
AAATGGGGGTTCCCACTATTTTATTCATGCTACCCATCAACTTTAAATTC
TTCTACCTCAGCCTTCTAAATATTAGTATTATAGGCATATACCACCATAT
CCCTAGTATAATCTGTTGTTTTTTAAAGTGAATTTAAGTTTGTAGATGGA
GCAGAAAGTTCACTGTTCTCATATTCATATATTTCCCCAACATTCTTTAA
ATTTTCAGTGTATAAACATATTGTTTATAATTGATAATAATTGATAAACA
TCATAGCCAAAAGTAACATGGAAATGAAAGAGTTTATTTCATCTTAGACT
TCCAAGTGGTAGTCCAACACTGAGAAAAGTCGGAGCAGGAACTAAGCAGG
AAAGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTCAGGAAATTTCACTGGCA
ATTCAACAAAGTTGGTATTTTTCTTCCGTTCTAACCCTGAGAATTGAGTT
ATAGAGAAGCTCCACAACTTTTAGAAAGCCTAAAAAGGCATTGCTCAGGA
ATATAAGCTTACTGCCCAGGATTGCAAAGTGTCTCACTTACTCTTTTAGT
CATTTAATTATTTATGGATTATTTTTCTGCACACCTGGGAAGAGCTAGGT
TCCATACAAGGCAGTAGAAATTTTATATATATCATATACATACAATCAAT
ATACAATATAATATATTTATATATTGTATACTCATATATACAATATATAT
ATGTGTATATATATATATATATATATATACAATCTTAAAAATAAAACTTA
GGGGAATTTGGAGATTATTTAGTTAATAAAGTACTTGCCATGAGGACTTA
AATTGGCTCCCCATACCCAAATAATAGCTGGGCATGATGGATGCCTGTAA
TCCCAGCACAGGAGACAAATAAACTGTAGGATTCCTGGGTCTTGATGGCT
AGTCTAGCTTAATCAATGCACTCCAGGTTCAATGATAGATCCTATTTTAA
AGAATACATAAACATCTAGCTGAGATTCCTACCAGCGGGGGATATGGAGA
CTCCCATAGCTAGGTGGGACTTCCAATGGAGGAAGAGGGGTCAACCCACC
CACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_e20.b1 MSMg01no290_e20.b1 CHROMAT_FILE:
MSMg01no290_e20.b1 PHD_FILE: MSMg01no290_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:48 2005
         (329 letters)



>mm_chr5_46145876_46146604
          Length = 729

 Score =  605 bits (313), Expect = e-177
 Identities = 325/329 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttatatttcaaatgggggttcccactattttattcatgctacccatcaactttaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atttatatttcaaatgggggttcccactattttattcatgctacccatcaactttaaatt 506

                                                                       
Query: 61  cttctacctcagccttctaaatattagtattataggcatataccaccatatccctagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttctacctcagccttctaaatattagtattataggcatataccaccatatccctagtat 446

                                                                       
Query: 121 aatctgttgttttttaaagtgaatttaagtttgtagatggagcagaaagttcactgttct 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 aatctgttgtttttttaagtgaatttaagtttgtagatggagcagaaagttcagtgttct 386

                                                                       
Query: 181 catattcatatatttccccaacattctttaaattttcagtgtataaacatattgtttata 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catattcatatattttcccaacattctttaaattttcagtgtataaacatattgtttata 326

                                                                       
Query: 241 attgataataattgataaacatcatagccaaaagtaacatggaaatgaaagagtttattt 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attgataataattgatgaacatcatagccaaaagtaacatggaaatgaaagagtttattt 266

                                        
Query: 301 catcttagacttccaagtggtagtccaac 329
           |||||||||||||||||||||||||||||
Sbjct: 265 catcttagacttccaagtggtagtccaac 237


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)