BAC Information

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BAC

Clone NameMSMg01-290E23
Chromosome5 (Build37)
Map Location 55,553,479 - 55,553,717
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290E23.T7 (MSMg01no290_e23.b1)MSMg01-290E23.TJ (MSMg01no290_e23.g1)
ACCAG419624AG419625
length757754
length of high quality
(start - end)		630 (128 - 757)679 (76 - 754)
definitionCHROMAT_FILE: MSMg01no290_e23.b1 PHD_FILE: MSMg01no290_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:49 2005CHROMAT_FILE: MSMg01no290_e23.g1 PHD_FILE: MSMg01no290_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGATGCCTACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCTTCAGGGAACTGCAAATCAAAACAACCCTGAGATT
CCACGTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTAACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTAG
GATTGCAAACTTGTACAAGCACTCTGGAAATCAGTCTGGCGGTTCCTCAA
AAAAGTAGACATAGTACTACCGGAGGATCCAGCAATACCACTTCTGGGCA
TATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATG
TTTATAGCAGCCTTATTTATAATAGGCAGAAGCTGGAAAGAACTCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AATACTACTCAACTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACT
TAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAG
AAAGAAGACCAAAGTGTGGACACTTTGCCACTTCTTAGATTTGGGAACAA
AACACCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGGGAGACAGGAATATGCACTTTG
AATGAGCTGGAGAACCAGATAGAGCTCCAGCCAGCATCCTACTTTGCTTG
TATTGTCAATGGAGCACCCAGGAAGAATATACTTAAAGAAATATTCTTGA
ATAATAAAAACAAGATTTAAAATTTACTAGTAATTAGTTACTTTATTGGC
ATAATATGTGTGGGTACATGTGATTCTCCAGAGAATCTTGAAGGACAGCT
TTCTGGAGCTGAGCACTTATGTTCATCATTTTTGTGTTCTAAAAATAAAG
CTCAGGTCACCTGGGTAACTTAGCAATAACCTTTTCTGATGAGATGCATC
TTTTACTATGAAACCATATTTTACAACAATGATCCTATACTATGCACTTG
AAATACACAGAGGTGGTAACTACCTATCAGAACTGTAAATCTATGTATGC
ACTGCATATGCCTAGAAACTAAAATAAAACTTTAACATACATATATATGC
ATATATATATGTATATATATATGTATATATATGTATATATATATATATGA
TGCACTTTATATGTTCATATTATGTAGTCTTTAATAAAATATATTCATTT
ATTTAAATTTTCCTTAATAGTTTTTCCAACAACACAATATAATATGACTA
TTTTAAGCAAAGATTGGTAAAAATATATTTTGTAAGGAATTATAGGAAGG
GAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_e23.g1 MSMg01no290_e23.g1 CHROMAT_FILE:
MSMg01no290_e23.g1 PHD_FILE: MSMg01no290_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:49 2005
         (679 letters)



>mm_chr5_55553279_55554357
          Length = 1079

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggggagacaggaatatgcactttgaatgagctggagaaccagatagagctccagccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aggggagacaggaatatgcactttgaatgagctggagaaccagatagagttccagccagc 260

                                                                       
Query: 61  atcctactttgcttgtattgtcaatggagcacccaggaagaatatacttaaagaaatatt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctactttgcttgtattgtgaatggagcacccaggaagaatatacttaaagaaatatt 320

                                                                       
Query: 121 cttgaataataaaaacaagatttaaaatttactagtaattagttactttattggcataat 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgaataataaaaacaagattaaaaatttactagtaattagttactttattggcataat 380

                                                                      
Query: 181 atgtgtgggtacatgtgattctccagagaatcttgaaggacagctttctggagctgagc 239
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 atgtgtgggtacatgtgattctccagagaatcttgaaggacagctttccggagctgagc 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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