BAC Information

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BAC

Clone NameMSMg01-290H02
Chromosome5 (Build37)
Map Location 54,766,236 - 54,766,545
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290H02.T7 (MSMg01no290_h02.b1)MSMg01-290H02.TJ (MSMg01no290_h02.g1)
ACCAG419720AG419721
length741748
length of high quality
(start - end)
516 (42 - 557)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no290_h02.b1 PHD_FILE: MSMg01no290_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:59 2005CHROMAT_FILE: MSMg01no290_h02.g1 PHD_FILE: MSMg01no290_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTGGTCTTACCACATTCCCCATCATCCTGAAGCAGCTGGTCTGATAGA
AAGATGGAATGGCCTTTTGCAGACGCAGTTACAGTGTCAATTAGGTGGTA
ACAGCTTGGAAGGCTGGGGCAGAGTTCTTCAGAAGGCAGTATATGCTTTG
AATCAGCGCTCGATATATGGTACAGTTTCACCTATAGCCAGGATTCATGG
GTCCAGGAATCAAGGGGTGGAAAACGGAATAGTTCCACTTACTATCACTC
CTAGTGACCCTCTAGGAAAATTTTTGCTTCCTGTCCCCATAACTCTAGGT
TCTGCTGGCTTAAAAGTTTTGGCTCCAGAGAGGGGAGTGCTCCTACCAGG
AGCTACAACAAACATTCCATTGAACTGGAAGTTCAGACTTCCCCCTGGTC
ATTTTGGGCTTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACA
GTGTTAGGAGGGGTGATAGATCCAGATTACCATGGAGAAATTGGATTACC
TCTTCACAATGGTGGTAAGCAAGATTATGTCTGGAGTGTAGGAGATCCCT
TAGGGCGTCTCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAA
CTACAACAGCCTACTCCAAGCAGGGATGACAAGATCGCAGACCCATCAGG
AATGAAGGGATGGGTCAATCCTCCAGGAAAAGAGCCAAGAC
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTCAATTCATATGGTCAAAGTAAAAA
ATAGTAATCTCTTCCAGTGAGATGAATGTGGAGTTTGTCATTGCTTTGAT
GAAATGTTTTTGTCATACGTGTCTGTATTAGATAAATTATTTACTGTGAC
AGAGGAAAAATGAACATGAGAGAGGGAGAGCAAGAGCAAGATTGAGAGCA
AGAGAGCGAGAGAGACAGAGAGAGAGAGACAGAGAGAGAGAGAGACAGAG
AGAGAGAGCACCTCAGACTCCTTCAGAAAACTCCATGATACCCTGTGGAA
CTCAGTAGACACCTATTATTTTATCACCGCCCCACGCAACCCAGACAGTG
CGTCAGCCATTCAGCACCCTTGTGTGAGCATCTGTGACTCAGAGCTCTGA
AGATGAAGGGGAATCAATCAAAACACATAAATAAATCCTGAGTCTGAATA
CAGTGGAATTCAAAAATATAGACAGAAGTCCAAGGGATATTCCAGGGAGA
TCTGTGATATGCATACCTAACTCTGTGCTTGGAATATATTATCCAGTAAA
AGACAGAGAGTATCCGAAAGACAGAAGTGATTGCACACATAATTCAGTAA
TAAACATCCCCCTCCTAACAGTATGTCTGGGAATGAGATGAGCANGGCCT
TGCCTCTGCACCACTTCGTATATCCCCACAAGTGTCTGGTACAAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_h02.g1 MSMg01no290_h02.g1 CHROMAT_FILE:
MSMg01no290_h02.g1 PHD_FILE: MSMg01no290_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:59 2005
         (288 letters)



>mm_chr5_54766201_54766888
          Length = 688

 Score =  476 bits (246), Expect = e-139
 Identities = 284/310 (91%), Gaps = 22/310 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcaattcatatggtcaaagtaaaaaatagtaatctcttccagtgagatgaatgtgga 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctttcaattcatatggtcaaagtgaaaaatagtaatctcttccagtgagatgaatgtgga 286

                                                                       
Query: 61  gtttgtcattgctttgatgaaatgtttttgtcatacgtgtctgtattagataaattattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtttgtcattgctttgatgaaatgtttttgtcatacgtgtctgtattagataaattattt 226

                                                                       
Query: 121 actgtgacagaggaaaaatgaacatgagagagggagagcaagagcaagattgagagcaag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 225 actgtgacagaggaaaaatgaacatgagagagggagagcaagagcaagattgagaggaag 166

                                                                       
Query: 181 agagcgag--------agagacagagagagagagacagagagagagagagacagagagag 232
           ||||||||        ||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 165 agagcgagcgagggagagagacagagagagagagagagagagagagagagagagagagag 106

                                                                       
Query: 233 agag--------------cacctcagactccttcagaaaactccatgataccctgtggaa 278
           ||||              ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 agagagagagagagagagcacctcagactccttcagaaaactccatgataccctgtggaa 46

                     
Query: 279 ctcagtagac 288
           ||||||||||
Sbjct: 45  ctcagtagac 36


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)