TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGTCACTTACATTAACTTGAGTAATTTTAAAGGTTTCTTTCTAG
TTTTAAAATTCTATCAGATCATTCTCTGCCATATTGTACCACACTCTATT
GCTATATGACTAAAACATTTTGCTCATAGACAAGTTCTGCAGACTGATAG
GTTATGGTATTTATATCATATATCTGTGGGCTATAATTGTGCTGCTTCTA
CATAAGCGTAACTGATATCAGAGGGAACTTCCCATCGCCTTCTTCATCCA
ACCCCAAGGTTAATATGACTTACATTGGTCAGAGGCAAGGTAATGATGGT
TCAAGCAAGAGACATGATGGATAAATTACCGAAAACAACTTATTCAAGAT
GACAAGGCAAGATACCTAATAATCAATCAGAAGTAAATTTCCACATTTTT
CCAAATGAGTTGCCATCCTGTCCCTACTGGCTTGCCTATTCTGCCTAGTT
TATAAAGAANAATTGCAGACGTTCTGTCTAAAATTCCTTGCTTTCTTCTC
ATTACAAAATAAGAACCTCACTTTCCAGAGATCAATTAAAGAGTAGAAAA
GAAGCCCGATAAGAAACAGAGAAGACTTGAGGTTAAAAACAGTTTCTGCA
TTAGACCCACTTTTAAATATTGATGCCTAAGTCACCCAAGGTTATTTGAA
GTTAACCCCAATGACAGTATCAGTTTCTCCC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGAAATCCTGCTTTATCAGCCTTTC
CTGCTGGGGTGGGCTTTTTTGCACCGGGGGGATTATCAATGTTTGTACAA
GCAATGCTTCACCCATACTCCTGTAAGTAACTCCAATAAACTCAAAAGTT
GACTAAACTAGACTTTGATTGAATCATTACTTTGGTCTGTTGTTGCTACC
TTGTTTGATATATATAAAATTTGTTTCTCCATTTCCTGAAGAAAAGGCAA
GTGAGGCAGACACACAAACAGAGAGATACACAGACAGACAGACAAAATAA
TCACTCAGAAGTTGATTTGATCAGACGGCTCACAGGTCACCTAACCAAAA
GGTTAGGAGAGCCAAAGAAGTGTCAGGTCTCAAATCATAGACAAATGACA
GAGGTGCCTATTTAATATGTCACAGTGGACCTGGTAGCCAGGTTCTCTCA
GCATCCTTCAGACCTTACATATTACAGGGTATTCCTGTCAAACCTAGCTC
TGTACCCTAAACATCTCTAGTCTAGGGGCTGGGCTGCTCTTCTCCCAGAC
GTCCTTAACTGGCCATGTTCTGTTTTATCTACAACCAACTTTTCCCACCA
TACCCAGGAGAAGTTCTGTCCTTCCTCTCCCCCCCCCCCTCCCAATTCAT
CGGTGCTGATGATACCAGGAACTGCAGGTGGC

Query= MSMg01no290_n01.b1 MSMg01no290_n01.b1 CHROMAT_FILE:
MSMg01no290_n01.b1 PHD_FILE: MSMg01no290_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:28 2005
         (559 letters)



>mm_chr5_42713640_42714599
          Length = 960

 Score = 1000 bits (517), Expect = 0.0
 Identities = 546/556 (98%), Gaps = 1/556 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgtca-cttacattaacttgagtaattttaaaggtttctttctagttttaaa 63
           ||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gaattccttgtcaccatagattaacttgagtaattttaaaggtttctttctagttttaaa 701

                                                                       
Query: 64  attctatcagatcattctctgccatattgtaccacactctattgctatatgactaaaaca 123
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 700 attctatcagatcattttctgccatattgcaccacactctattgctatatgactaaaaca 641

                                                                       
Query: 124 ttttgctcatagacaagttctgcagactgataggttatggtatttatatcatatatctgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ttttgctcatagacaagttctgcagactgataggttatggtatttatatcatatatctgt 581

                                                                       
Query: 184 gggctataattgtgctgcttctacataagcgtaactgatatcagagggaacttcccatcg 243
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gggctataattgtcctgcttctacataagcgtaactgatatcagagggaacttcccatcg 521

                                                                       
Query: 244 ccttcttcatccaaccccaaggttaatatgacttacattggtcagaggcaaggtaatgat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ccttcttcatccaaccccaaggttaatatgacttacattggtcagaggcaaggtaatgat 461

                                                                       
Query: 304 ggttcaagcaagagacatgatggataaattaccgaaaacaacttattcaagatgacaagg 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 460 ggttcaagcaagagacatgatggataaattaccgaaaacaacttattcaagatggcaagg 401

                                                                       
Query: 364 caagatacctaataatcaatcagaagtaaatttccacatttttccaaatgagttgccatc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 caagatacctaataatcaatcagaagtaaatttccacatttttccaaatgagttgccatc 341

                                                                       
Query: 424 ctgtccctactggcttgcctattctgcctagtttataaagaanaattgcagacgttctgt 483
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 340 ctgtccctactggcttgcctattctgcctagtttataaagaaaaattgcagatgttctgt 281

                                                                       
Query: 484 ctaaaattccttgctttcttctcattacaaaataagaacctcactttccagagatcaatt 543
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 280 ctaaaattccttgctttcttctcattacaaaataaggacctcactttccagagatcaatt 221

                           
Query: 544 aaagagtagaaaagaa 559
           ||||||||||||||||
Sbjct: 220 aaagagtagaaaagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 960
Length adjustment: 10
Effective length of query: 549
Effective length of database: 950
Effective search space:   521550
Effective search space used:   521550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)