XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATGACAATGAAAGCACAACATACCCAAATGAAAGCAGTGCTAAGAGGGA
AGTTCATAGTGTTAAGCATTTTCATAAAGAAATTAGTGAGAATTTGTACT
AGTAACTTAACAGTACACCTGAAAGCTCTAGAACAAAAGAAGAAAACCAC
ACCCAAGAAGAGTAGACAGCAAGAAATAATCAAACTCAGGGCTGAAATCA
ATAAAATAGAAACAAAGAGAATAATACAAAAAAAAAATCAATGAGACAAA
GACTTTGTTCTTTAAGAAAAATCAACAAAATAGAAAAACCTTAGCCAAAC
TAACTATTGTGCAGAGAAAGAATACCAAATTATGAAAAATCAGCAATGAA
AGGGGAAACCCAACAACAGACACCAAGAAAATCCAAAGAATTTGTCGTAC
TTCAAAAACTTGTACTCTACAAAATTGGAAAATCTAAATGAAATGGATGA
TTTTTCTTGATAGATAACCATTTATCAAAGTTAAATTAAGATCAGGTAAA
CAATCTAAATAGACCTATAACCCCTAAGGAAATAAAAGCACTCATTAAAA
GTCTCCCAACCAAAATAAGCCCAGATGGTTTTAATACAAAATTCTACCAG
ACTTTCAAAGAAGAGTTAATATCAATACTCTTCAAATTATTCCATAAAAT
AGAAACATAAGGAACACTGACAAATTCATTTTATGAGGCCATAGTCATCC
CN

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGGAACAAGAAAGGAATTACATGTTCTAT
GAAATAATGTTATTAATTGAAGAGTAAAAGGATATATAATATGTGTGTGT
ATTAAAATATAAGCCTCAGTGGTCACAAGAAGACACGGTCTAAAATATGT
ACACACAGGATTGTATAATTTTAGATCATTAAGAACAAAGTTTTTATAAC
ACTAAAAAAACAAAATTAAATTAATTTTTAAAAATTTTGTTTTAATTGTA
CTTTAAAAAATAAGATATAGGAAGAATTCTTAAATAAATATTTTAAACAC
AGTGAGAGTAATACAGCTAATTATTTTGCAGTATCTTTTCTTTTTCTAAA
AATCTTAAACTTCCCATAATCCAACTTATACTATGCTCTAGGTAGAAGTA
TTGATTGATCAGCATAAAGCTATTGAGAACTTAGTGTCTCTGATTTCTAG
TTGAAATCACCTGTTAACTCTGCTGACTCTACCCACATGTTTTCTGTGTT
CCATTCCATAGGATCCTAGGCTAAATCTTCCATAGCAGAAAACATATATC
CAGTACTACATATTTTATAATTTTGAAGATATTTTTATATTCAAATTACA
GATTTAATTATTTTTAAAATATGTAGGTGTTAAGAGAAGGAGGCTGCCAA
ACAGAGAATTTAGAACCAATATGGAGTTAGTGTTTTGTTTTGTTTTTN

Query= MSMg01no291_c14.g1 MSMg01no291_c14.g1 CHROMAT_FILE:
MSMg01no291_c14.g1 PHD_FILE: MSMg01no291_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:53 2005
         (676 letters)



>mm_chr5_89675903_89676978
          Length = 1076

 Score = 1201 bits (621), Expect = 0.0
 Identities = 657/669 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggaacaagaaaggaattacatgttctatgaaataatgttattaattgaagagtaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 201 agggaacaagaaaggaattacatgttctatgaaataatgttaaaaattgaagagtaaaag 260

                                                                       
Query: 61  gatatataatatgtgtgtgtattaaaatataagcctcagtggtcacaagaagacacggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatatataatatgtgtgtgtattaaaatataagcctcagtggtcacaagaagacacggtc 320

                                                                       
Query: 121 taaaatatgtacacacaggattgtataattttagatcattaagaacaaagtttttataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaatatgtacacacaggattgtataattttagatcattaagaacaaagtttttataac 380

                                                                       
Query: 181 actaaaaaaacaaaattaaattaatttttaaaaattttgttttaattgtactttaaaaaa 240
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| 
Sbjct: 381 actaaaaaaacaaaattaaattaattttttaaaattttgttttaattgtactttgaaaag 440

                                                                       
Query: 241 taagatataggaagaattcttaaataaatattttaaacacagtgagagtaatacagctaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagatataggaagaattcttaaataaatattttaaacacagtgagagtaatacagctaa 500

                                                                       
Query: 301 ttattttgcagtatcttttctttttctaaaaatcttaaacttcccataatccaacttata 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttattttgcagtatgttttctttttctaaaaatcttaaacttcccataatccaacttata 560

                                                                       
Query: 361 ctatgctctaggtagaagtattgattgatcagcataaagctattgagaacttagtgtctc 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctattctctaggtagaagtattgattgatcagcataaagctattgagaacttagtgtctc 620

                                                                       
Query: 421 tgatttctagttgaaatcacctgttaactctgctgactctacccacatgttttctgtgtt 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 tgatttctagttgaaatcacctgttaactctgctgactctatccacatgttttctgtgtt 680

                                                                       
Query: 481 ccattccataggatcctaggctaaatcttccatagcagaaaacatatatccagtactaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccattccataggatcctaggctaaatcttccatagcagaaaacatatatccagtactaca 740

                                                                       
Query: 541 tattttataattttgaagatatttttatattcaaattacagatttaattatttttaaaat 600
           |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 tattttatgattttaaagatatttttatattcaaattacagatttaattaattttaaaat 800

                                                                       
Query: 601 atgtaggtgttaagagaaggaggctgccaaacagagaatttagaaccaatatggagttag 660
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 801 atgtaggtgttaagagaaggaggctgccaaacagagaatttagaaccaatgtggagttag 860

                    
Query: 661 tgttttgtt 669
           |||||||||
Sbjct: 861 tgttttgtt 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)