ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCTTTTCCCTCTAATGTTTATGTATCCAAATATCTTTCATGGTAATT
TTAAAAATTATTTATAATTCCTTATAATATTTAAACTCAGGTAAATGCAC
AATTGTAGTTGTAAGCCACTCGCGGCCTACATGAACCGGGTACTCCTGAA
AGGCAGGCTGGGGCTGAAAAGGACTAGATTGTGAGAGAAGAATTAGGCCA
AGACAAATTGCTCTGATCAAAGCCCCCAAGTTTACTAAGAGTCTGTGCTT
ATAAAGAGGGGAGGCCCATCCTCTGTCATTACATTCTTGGTGCCCAGAGC
CAGCCCAAAGACACTGCGCAATGTGGATTGTCTCAAAGGTGTCCGAGGAG
GCAGCAGGATCTCGCACAAGAGCAGTGGCAGTTGACACAAACAGAAGAAG
CCAGCCAAGTTGGAAAGCTACAATGTAGGTGGCCCCACCTCAGTGGTAAC
AAGGTCTGCCCCAGCCCGCTTCAGGCTGGGGGAGGCTACACACAATGCTC
AATTTCTTTTGTCAAAATTCTTCATAATGTAAATACAGATTGACCACATT
CTGTGCTAATGCGTGCTAAGTATGGAAGTGCAAAAATTTGGTTCAGAAAC
TTCGTTTTGTCATATAGAAGAACAGTTTGCTTGGAGGCCTAGAACCAACT
GTCTTTACTTGGTTGTAGTTTTCATGAAGATGCTACATTTTCAA

TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTTCTGCGAAATTCTAGAAGTTTTATGTAAATAAAATATAATC
ATGTGAAACTGATTTACTCCCATTTGAATGGGCAAGGATGCATGGCAAAT
GAGCACATGAGCAATCTATTATTAAGAAAATACATACTTGAATATGCATG
TACACAAATTAGAATGCTTGTAACTTTTAAAAAGTAAATCCATATAAGGT
ATTCATGAATGTGGCATATGGAATTTTTATTCACATATGTTGGGACATAT
TTTTGGACTTCCTTGAAATGCTAAATGCAATTGTTCAATAGGATTTACAT
ACTCTTTCATACTGAAAATATAATTCTACATAGAATTTTATATAAATCTC
AATTATAACTTTTAATTAGCAAAGTTCAAAAATCATCTAAAATATTCATT
AATAAAATAATAAAATGCATTTATATATGGAATTCTCAACAATATAAATG
AATTACTGAAGCAACAAAGGTGGATTCATTTTCAACTTTGATAAGGAAAA
AGAAGTCTAAAGTGAAAATGTTGTATAATAACATCACATTTATTTTAATT
ATAGGCTAATTTATTATAACTAAATTTAGCAGAGGGTAAGTTTAGTTCCT
CCTTACCCTTGTAGAAGGTATAGAGGAATTTTAATCCAGCTACATGGGTG
CTCTGGTAAAGAATAATATCTAAAGACCTTTTAGGTCTGTGCAATCCCAT

Query= MSMg01no291_k03.b1 MSMg01no291_k03.b1 CHROMAT_FILE:
MSMg01no291_k03.b1 PHD_FILE: MSMg01no291_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:28 2005
         (702 letters)



>mm_chr5_55851727_55852828
          Length = 1102

 Score =  719 bits (372), Expect = 0.0
 Identities = 396/404 (98%)
 Strand = Plus / Minus

                                                                        
Query: 299  tgcccagagccagcccaaagacactgcgcaatgtggattgtctcaaaggtgtccgaggag 358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 tgcccagagccagcccaaagacactgcgcaatgtggattgtctcaaaggtgtccgaggag 1043

                                                                        
Query: 359  gcagcaggatctcgcacaagagcagtggcagttgacacaaacagaagaagccagccaagt 418
            |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 gcagcaggatctcggagaagagcagtggcagttgacacaaacagaagaagccagccaagt 983

                                                                        
Query: 419  tggaaagctacaatgtaggtggccccacctcagtggtaacaaggtctgccccagcccgct 478
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 982  tggaaagctacaatgtaggtggccccacctcagtggtgacaaggtctgccccagcccgct 923

                                                                        
Query: 479  tcaggctgggggaggctacacacaatgctcaatttcttttgtcaaaattcttcataatgt 538
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922  tcaggctgtgggaggctacacacaatgctcaatttcttttgtcaaaattcttcataatgt 863

                                                                        
Query: 539  aaatacagattgaccacattctgtgctaatgcgtgctaagtatggaagtgcaaaaatttg 598
            |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 862  aaatacagattgaccacattctgtgctaatgcttgctaactatggaagtgcaaaaatttg 803

                                                                        
Query: 599  gttcagaaacttcgttttgtcatatagaagaacagtttgcttggaggcctagaaccaact 658
            |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 802  gttcggaaacttcgttttgtcatatagaagaacagtttgcttggaggtctagaaccaact 743

                                                        
Query: 659  gtctttacttggttgtagttttcatgaagatgctacattttcaa 702
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742  gtctttacttggttgtagttttcatgaagatgctacattttcaa 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no291_k03.g1 MSMg01no291_k03.g1 CHROMAT_FILE:
MSMg01no291_k03.g1 PHD_FILE: MSMg01no291_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:28 2005
         (611 letters)



>mm_chr5_55695010_55696020
          Length = 1011

 Score = 1166 bits (603), Expect = 0.0
 Identities = 609/611 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaatgggcaaggatgcatggcaaatgagcacatgagcaatctattattaagaaaatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaatgggcaaggatgcatggcaaatgagcacatgagcaatctattattaagaaaatac 260

                                                                       
Query: 61  atacttgaatatgcatgtacacaaattagaatgcttgtaacttttaaaaagtaaatccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacttgaatatgcatgtacacaaattagaatgcttgtaacttttaaaaagtaaatccat 320

                                                                       
Query: 121 ataaggtattcatgaatgtggcatatggaatttttattcacatatgttgggacatatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaggtattcatgaatgtggcatatggaatttttattcacatatgttgggacatatttt 380

                                                                       
Query: 181 tggacttccttgaaatgctaaatgcaattgttcaataggatttacatactctttcatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggacttccttgaaatgctaaatgcaattgttcaataggatttacatactctttcatact 440

                                                                       
Query: 241 gaaaatataattctacatagaattttatataaatctcaattataacttttaattagcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaatataattctacatagaattttatataaatctcaattataacttttaattagcaaa 500

                                                                       
Query: 301 gttcaaaaatcatctaaaatattcattaataaaataataaaatgcatttatatatggaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttcaaaaatcatctaaaatattcattaataaaataataaaatgcatttatatatggaat 560

                                                                       
Query: 361 tctcaacaatataaatgaattactgaagcaacaaaggtggattcattttcaactttgata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcaacaatataaatgaattactgaagcaacaaaggtggattcattttcaactttgata 620

                                                                       
Query: 421 aggaaaaagaagtctaaagtgaaaatgttgtataataacatcacatttattttaattata 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 aggaaaaagaagtctaaagtgaaaatgttgtataataacatcacatttattttaattaca 680

                                                                       
Query: 481 ggctaatttattataactaaatttagcagagggtaagtttagttcctccttacccttgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctaatttattataactaaatttagcagagggtaagtttagttcctccttacccttgta 740

                                                                       
Query: 541 gaaggtatagaggaattttaatccagctacatgggtgctctggtaaagaataatatctaa 600
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaggtatagaggaattttaattcagctacatgggtgctctggtaaagaataatatctaa 800

                      
Query: 601 agaccttttag 611
           |||||||||||
Sbjct: 801 agaccttttag 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)