BAC Information

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BAC

Clone NameMSMg01-291K13
Chromosome5 (Build37)
Map Location 5,648,575 - 5,648,896
singlet/doubletsinglet
Overlap geneA330021E22Rik
Upstream geneFzd1, LOC667678, Pftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705
Downstream geneSteap2, Steap1, LOC727711, LOC546854, LOC100041208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291K13.T7 (MSMg01no291_k13.b1)MSMg01-291K13.TJ (MSMg01no291_k13.g1)
ACCAG420596AG420597
length743751
length of high quality
(start - end)
322 (416 - 737)344 (378 - 721)
definitionCHROMAT_FILE: MSMg01no291_k13.b1 PHD_FILE: MSMg01no291_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:30 2005CHROMAT_FILE: MSMg01no291_k13.g1 PHD_FILE: MSMg01no291_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAAGTGTGCCTATGTAGACACTCTAATAACAGTTCAAAGACTAGAGACT
GTATGGCAGTCCCCCACCAGACAGTCGGCAAGCTGTGGTGACCTCTGTAT
GCCCACTGCTATATATAATAAGATATGTAAAAGAGGCATACATGGCTGAT
TAGAGGAAAGTCTTGTTTTAAGGAGGAATTACAATGGGACAGGACAGAAA
ACTGTCACCTTCCGTGTTAGCTTTTGATATGGTGAGTAATTCCCACCGCA
CTCATTCTAAGCAGCTGCAAATGACAGGATTCAACCAGGAGGTATAAGTC
ATGATAAGGAGATGGAAGGGAAAGAGAGCTGTGCTGGAAAGCCCTTCATG
GGGTCCACACCCCTAGAGCTTGGAAGAATCCAGCACCGAGGAGGACAAGA
ACCAATCAGAAGTGATCCATGATTCCCCTCAGGTCCGACCTATAATAGAG
ATGAAGGGAAAATCCACAACACATTGGTTTTCCTTAGGTTTAGAGAGTTG
GTAGCAAGCAGCTCTACTTCTGAATGCCTTTTTAATAGGCTGGCTTTAGA
AGTTGTATAACTTTACAAAGTGATAAAGTATCACTTCCCAGGAAGCTGTT
ATGAGACTTTTCCTAGGAGATGTACACAGATTTGTTTACTTCAGATAGGG
AACTGCTAACAGATTACAGGTACAGTTCTACGTAGTCTAGCTT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
ATCACCTGAAAATTTGTTCCCCAACACTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAAATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCAGTTCCTCAGGAAATTGGACATAGTACTACCGGAGGATCCAG
CAATATCTTTCTTGGGCATATATCCCGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATCTTCATAGAAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCTA
AACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_k13.b1 MSMg01no291_k13.b1 CHROMAT_FILE:
MSMg01no291_k13.b1 PHD_FILE: MSMg01no291_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:30 2005
         (322 letters)



>mm_chr5_5648375_5649096
          Length = 722

 Score =  615 bits (318), Expect = e-180
 Identities = 321/322 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcttggaagaatccagcaccgaggaggacaagaaccaatcagaagtgatccatgattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcttggaagaatccagcaccgaggaggacaagaaccaatcagaagtgatccatgattc 260

                                                                       
Query: 61  ccctcaggtccgacctataatagagatgaagggaaaatccacaacacattggttttcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctcaggtccgacctataatagagatgaagggaaaatccacaacacattggttttcctt 320

                                                                       
Query: 121 aggtttagagagttggtagcaagcagctctacttctgaatgcctttttaataggctggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtttagagagttggtagcaagcagctctacttctgaatgcctttttaataggctggct 380

                                                                       
Query: 181 ttagaagttgtataactttacaaagtgataaagtatcacttcccaggaagctgttatgag 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 ttagaagttgtataactttacaaagtgatgaagtatcacttcccaggaagctgttatgag 440

                                                                       
Query: 241 acttttcctaggagatgtacacagatttgtttacttcagatagggaactgctaacagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttttcctaggagatgtacacagatttgtttacttcagatagggaactgctaacagatt 500

                                 
Query: 301 acaggtacagttctacgtagtc 322
           ||||||||||||||||||||||
Sbjct: 501 acaggtacagttctacgtagtc 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)