Query= MSMg01no291_o04.b1 MSMg01no291_o04.b1 CHROMAT_FILE:
MSMg01no291_o04.b1 PHD_FILE: MSMg01no291_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:47 2005
(702 letters)
>mm_chr5_90956163_90957264
Length = 1102
Score = 1294 bits (669), Expect = 0.0
Identities = 690/697 (98%)
Strand = Plus / Minus
Query: 5 gaattcattcctattttcagttaatgacgattggatttcttgcatttcaccataaagaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gaattcattcctattttcagttaatgacgattggatttcttgcatttcaccataaagaca 651
Query: 65 ttaaagggaggaaatctgaaatacaatatgatcccttagtttcagcttcaagccatagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttaaagggaggaaatctgaaatacaatatgatcccttagtttcagcttcaagccatagaa 591
Query: 125 aatttaaattattatgctagtttagtaaatttgatttaacattattaaacccatattacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 590 aatttaaattattatgctagtttagtaaatttgatttaacattattaaacccatattccc 531
Query: 185 ataaacaaccaaatattacaaaataaattatgagtggcatccctttaactgggttacagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ataaacaaccaaatattacaaaataaattatgagtggcatccctttaactgggttacagt 471
Query: 245 tgagaataaaataatttaggaggacatcttctgtccactgcttaatttgaagcagatatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgagaataaaataatttaggaggacatcttctgtccactgcttaatttgaagcagatatt 411
Query: 305 tcccaatacctaaaattcaagtcatttaagtaatatactgtccttactgtaagtaaaaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tcccaatacctaaaattcaagtcatttaagtaatatactgtccttactgtaagtaaaaca 351
Query: 365 aatttaaaaccatcaccataaagcttaattttaattaagaagaaagctgtgtatttttaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aatttaaaaccatcaccataaagcttaattttaattaagaagaaagctgtgtatttttaa 291
Query: 425 tgaaattgtcttgactttaaagtgcctgaacaattttaactctacaatatgtttaccggt 484
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 290 tgaaattgtattgactttaaagtgcctgaacaatttcaactctacaatatgtttaccggt 231
Query: 485 atattcctttaaaaattcactctaagggttatgagatgctggggtaggagcaagaagtgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 atattcctttaaaaattcactctaagggttatgagatgctggggtaggagcaagaagtgg 171
Query: 545 gaagatgttggtcaaggacaaaatttcagatctataagagaaatcatttcaggaattcta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gaagatgttggtcaaggacaaaatttcagatctataagagaaatcatttcaggaattcta 111
Query: 605 ctataaatcatggtgactatagttaataatgcatgtcatataatttgaaaattgttaggt 664
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ctataaatcatgatgactatagttaataatgcatgtcatataatttgaaaattgttaggt 51
Query: 665 aaataaattgaaagtacccttaccatgaaaatataag 701
| ||||||||||||||| ||||||| |||||||||||
Sbjct: 50 agataaattgaaagtactcttaccacgaaaatataag 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no291_o04.g1 MSMg01no291_o04.g1 CHROMAT_FILE:
MSMg01no291_o04.g1 PHD_FILE: MSMg01no291_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:47 2005
(620 letters)
>mm_chr5_90797394_90798413
Length = 1020
Score = 1149 bits (594), Expect = 0.0
Identities = 613/624 (98%), Gaps = 9/624 (1%)
Strand = Plus / Plus
Query: 1 tcctactgaattcatgttccaccctcttgataccagtgaaatgccatgtgatcttgaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctactgaattcatgttccaccctcttgataccagtgaaatgccatgtgatcttgaaac 260
Query: 61 tatttgttgctgttatcagaatctgaagagagagtttgagaggctgatcctgtctcaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttgttgctgttatcagaatctgaagagagagtttgagaggctgatcctgtctcaaca 320
Query: 121 tcccaagtgctcagattgcagacgtgaaccaccacacacagcttcagattacattttgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccaagtgctcagattgcagacgtgaaccaccacacacagcttcagattacattttgac 380
Query: 181 tccctaactttacctggtgcttcaagtattaaacatctattattaaagtttccaagagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctaactttacctggtgcttcaagtattaaacatctattattaaagtttccaagagag 440
Query: 241 tcccagtataacaattcccttctgttgcctaatttccaagtagttgggcgccccc----t 296
||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 tcccagtataagaattcccttctgttgcctaatttccaagtagttgggcg-----ggggt 495
Query: 297 gggggagagtacaaatgaaggccaaaaatatcaccatattaatgataggaggaaattgcc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gggggagagtacaaatgaaggccaaaaatatcaccatattaatgataggaggaaattgcc 555
Query: 357 tgaggtagcatattcatcaccaataaggatataaaagcagggctgagaggtggctcagta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgaggtagcatattcatcaccaataaggatataaaagcagggctgagaggtggctcagta 615
Query: 417 gttaagagcacatactgctcttatacagaaactgaagttcaattcccagtgcccatgtta 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gttaagagcacatactgctcttatacagaaactgaagttcaattcccagtgcccatgtta 675
Query: 477 ggtggctcatgaccacctgtaattacaaacacctctggaaaaaggcagaaacaactaaaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggtggctcatgaccacctgtaattacaaacacctctggaaaaaggcagaaacaactaaaa 735
Query: 537 ataagtcttaaaacattcaaataattacatatatatgaaaactgaatatatatacataca 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ataagtcttaaaacattcaaataattacatatatatgaaaactgaatatatatacataca 795
Query: 597 tatgtatgtgtatatatatatgtg 620
||||||||||||||||||| ||||
Sbjct: 796 tatgtatgtgtatatatatgtgtg 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
