BAC Information

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BAC

Clone NameMSMg01-291P03
Chromosome5 (Build37)
Map Location 45,089,758 - 45,256,868
singlet/doubletdoublet
Overlap geneLdb2, LOC100041481
Upstream gene5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291P03.T7 (MSMg01no291_p03.b1)MSMg01-291P03.TJ (MSMg01no291_p03.g1)
ACCAG420802AG420803
length722790
length of high quality
(start - end)
234 (125 - 358)246 (183 - 428)
definitionCHROMAT_FILE: MSMg01no291_p03.b1 PHD_FILE: MSMg01no291_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:51 2005CHROMAT_FILE: MSMg01no291_p03.g1 PHD_FILE: MSMg01no291_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,256,636 - 45,256,868)(45,089,758 - 45,089,993)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAGGATCCGCGGAATTCTT
AAATGTTCTGTTAATTTGGAGGATTCAAAACATCCAAGGCTCTTGGAAGA
TTGTGATATATTTCCCTAAATTACCTAAAAGAAAATTCTAATGGGGTCCA
ATAATTTGTAGCCTGATACTAATTTTCATGCAATATCTCGATGGCCATCT
ATCCATCCTCTCCCCAGGGAGGGTCTCTAGGAAGGTGCCCAGCCCCTCTA
AATCATAAAGGAATTGGTTTGCAGTCTGAAAACCTTGTTGAAAAACAAAA
ATCATGCTACTTCTCTTTATTTCATTAGATGTTATTCAGAGGAGGCTGCC
TGATGATTTTTGTCGGCTACACAAAAGAATTTAGAGTTTAAATATAGTTT
GGGATCAGCCCCCCTTATACCATTGTTTCAGTACAAAGAGGGAAGGAACG
GCAAAGCTGTCCTGTTAAGAAAGAATTCATAAGCACAGATAATAAGGGAA
CCTGATTTTGGTGTTACCCAAGGAAGTGACATGTGTTTGACCATTAAACC
CATCACATACCTTGTGCAGGAGTCATAGGATAGAAATCCCCTTCTTGCCC
GTGCTCTGTATTGGTTGTTGCAGGAATGGAGAATTTATACGAAAGCCCAA
GCTAATGCACCACCGCCTGTATGTCCGGCTTCCCAACATCGACCCTGAAT
ATATTCCAGCAATCCCCTTCCN
TTTTTTCTTTTTCTTCTTTTTTTCTTTTCTCCTTTTTACCCATTTNNNNN
NNTCCCTCAATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTCTGCATAA
CCCTATAGTCTTCCTGCTGGCTCTTATACCCATGCAAAGCAGTGTGGGTA
GAGCTAAAATACTCCTTGTTTCATGTCTGTGATGGAATCGGCCAGAGTGG
TGAAGTCCTGAGGCCACCAAAGGGGAAATGCAAGACCCTGGGACTCCCTG
TTCTTGCAGGTCACCCAGGGTCAAGCTTCATGCTCTTGTAGAATTAATGA
GAGTGAACCAGATATGGAACATGCCTATTTATTAAAGCAATGTGTTCACT
ACAAAACTGTGTGATTGATTTTTTTTGCGCCCCCCCACCTGGGACAGTAC
CCCATGTAAGTGACAGACCTATGACCCATGTATATGGAAATGCCTCCCTT
AGCATGCTTTCCATTCTCAGGCATCTCTATTATGTGGAAAAGCAGAATTT
CCTGGTTCTTGAAATCTATTTAAATAAATTCCTGTGATTATCAAGTGTTG
GTTAGCTTTCTTTAATGAATCCCAAGCCAGCAGTTCACACCACTTCGGCA
GTTAAGAGAGGGTTTTTGTTTTTGTCTTTGCTTCTTAGAATTTCCACATT
AATACCTATTCTTTGCATTTTATAGCTTCACCTGTTTTTCCTCATTGATA
GTGAACCCAAATTTAACATGTACATTGTCCAGTTGGGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_p03.b1 MSMg01no291_p03.b1 CHROMAT_FILE:
MSMg01no291_p03.b1 PHD_FILE: MSMg01no291_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:51 2005
         (234 letters)



>mm_chr5_45256436_45257069
          Length = 634

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaaagaaaattctaatggggtccaataatttgtagcctgatactaattttcatgcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctaaaagaaaattctaatggggtccaataatttgtagcctgatactaattttcatgcaat 374

                                                                       
Query: 61  atctcgatggccatctatccatcctctccccagggagggtctctaggaaggtgcccagcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 373 atctcgatggccatctatccatcctctccccagggagggtctctaggaaggtgcccggcc 314

                                                                       
Query: 121 cctctaaatcataaaggaattggtttgcagtctgaaaaccttgttgaaaaacaaaaatca 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 313 cctctaaatcataaaggaattggtttgcagtctgaaaaccttcttgaaaaacaaaaatca 254

                                                                
Query: 181 tgctacttctctttatttcattagatgttattcagaggaggctgcctgatgat 233
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 253 tgctacttctctttatttcattagatgttattcagaggaggctgcctggtgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no291_p03.g1 MSMg01no291_p03.g1 CHROMAT_FILE:
MSMg01no291_p03.g1 PHD_FILE: MSMg01no291_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:52 2005
         (246 letters)



>mm_chr5_45089558_45090203
          Length = 646

 Score =  402 bits (208), Expect = e-117
 Identities = 229/236 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcaaagcagtgtgggtagagctaaaatactccttgtttcatgtctgtgatggaatcggc 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tgcaaagcagtgtgggtagagataaaatactccttgtttcatgtctgtgatgggatcggc 260

                                                                       
Query: 61  cagagtggtgaagtcctgaggccaccaaaggggaaatgcaagaccctgggactccctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagtggtgaagtcctgaggccaccaaaggggaaatgcaagaccctgggactccctgtt 320

                                                                       
Query: 121 cttgcaggtcacccagggtcaagcttcatgctcttgtagaattaatgagagtgaaccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgcaggtcacccagggtcaagcttcatgctcttgtagaattaatgagagtgaaccaga 380

                                                                   
Query: 181 tatggaacatgcctatttattaaagcaatgtgttcactacaaaactgtgtgattga 236
           |||||||||||||||   | ||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tatggaacatgcctaaaaactaaagcaatgtgttcactacaaaactgtgcgattga 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)