BAC Information

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BAC

Clone NameMSMg01-291P13
Chromosome5 (Build37)
Map Location 119,002,389 - 119,002,742
singlet/doubletsinglet
Overlap genenone
Upstream geneKsr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162
Downstream geneThrap2, LOC100039488, EG665194, LOC100039529
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291P13.T7 (MSMg01no291_p13.b1)MSMg01-291P13.TJ (MSMg01no291_p13.g1)
ACCAG420822AG420823
length751754
length of high quality
(start - end)
625 (72 - 696)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no291_p13.b1 PHD_FILE: MSMg01no291_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:53 2005CHROMAT_FILE: MSMg01no291_p13.g1 PHD_FILE: MSMg01no291_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGTTCTTTACGAAAGGAGGCTGCTCTGTAATTACAGATTATTAT
AATCTACTGATGGAAATTTTCTACGTAAATGTTGATGATAGCGTAAAAAT
AGTCCCATGATAGTACTTATCTGAAGTTGTTGCGATTTAATAGGATAATA
CATATAAAATAATGAAGAATATGGCATATATATATATATATATATATATG
AAAAAGAGAAAAAGAAAGTAGACTGGGCAAGCCATGGGGAGCAACCTAGT
CAGCAGCACCCCTCCATAGCCTCTGCTTCAGCTCCTGCCTCCAGGTTCCT
GTCCTGATTGAGTTGCTGTCCTGACTTCCTTTGATGATGAACTGTGATAT
AGAAGTGTAAGCCCCCCCCCCCCTTTCCTCCCCAAGTACCTTTTGGTTGT
GGTGTTTAGCACAACACTGCCAACCCTAAACAATACATTACCTTTACTTT
TTTTGAGATAGGGTCTCACTGTGTAGCCCTGGCTGACCTGGAACTCACTG
TGTCAATCGGGCTCAGCTCAGACTCACAGAAATCCAGTTGCCTCTGCCTC
CCAAGCGAGTAGCCCAGTATACATATATGTACACGCACATACAATACATA
TACCAATATACATATATGTACACGCACATACAATACAACATACAAATATA
CACAGATATAACTAAATGTGCACACTTAGTACACACAGAATCTCAAATAC
A
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTATGTAGACCAGGCGAACCTC
AGACCCACAGAATCCATCCTCCTCCGCCTCTCCAGTGCTGGGCTTAAAAG
TGTGTGTCATCACACTGGGAATAATGCAATGTTTTTTAAAGCTCAAAATC
ACACACACACAGACACACTCACACACAGACACACTCTCACATACACTCAC
ACAGAGAGACACTCACACACAAACACACACTCACACACACACTCACAGAC
AGACACTTACACACAGACACACTCTCTTATATACTCACACAGAGACACAC
ACACAGACACACATTTACTTATTCACCCCCCCCCCCCCTCTCACACACAT
ACAAACACACATATTCTCCCCCACCCTCAACACACAAAAACAGAGACATA
CGTACACAGACACACACACATACACACTCACACACAGACACACACACTCA
CACAGCATGGAAAGAATAAAGGGCAGTTGGAGATGTGGCTCAGCTGATCC
TGCCTGTTCTAACATATACTAGCCCTGACTCCCATCCCTATGGCATGCCT
GTAATCCTAATACATCACCTTCAGGAGATGGAGCCAGGAATTGAAAGCTA
TCCTTGACTTTGACTACACAAGTTCTAAGCCAACCTGGAATAGGAGAACC
TATTTCAGAAACAAACAAACATACCAACAACCAATCTAACTAAACATAAC
ATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_p13.b1 MSMg01no291_p13.b1 CHROMAT_FILE:
MSMg01no291_p13.b1 PHD_FILE: MSMg01no291_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:53 2005
         (625 letters)



>mm_chr5_119002389_119003413
          Length = 1025

 Score =  526 bits (272), Expect = e-153
 Identities = 321/354 (90%), Gaps = 26/354 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggctgctctgtaattacagattattataatctactgatggaaattttctacgtaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 354 gaggctgctctgtaattacagattattataatctactgatggaaattatctatgtaaatg 295

                                                                       
Query: 61  ttgatgatagcgtaaaaatagtcccatgatagtacttatctgaagttgttgcgatttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttgatgatagcgtaaaaatagtcccatgatagtacttatctgaagttgttgcgatttaat 235

                                                                       
Query: 121 aggataatacatataaaataatgaagaatatggc-------------------------- 154
           ||||||||||||||||||||||||||||||||||                          
Sbjct: 234 aggataatacatataaaataatgaagaatatggcatatatatatatatatatatatatat 175

                                                                       
Query: 155 atatatatatatatatatatatatgaaaaagagaaaaagaaagtagactgggcaagccat 214
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 174 atatatatatatatatatatatatgaaaaaaagaaaaagaaagtagactgggcaagccat 115

                                                                       
Query: 215 ggggagcaacctagtcagcagcacccctccatagcctctgcttcagctcctgcctccagg 274
           ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct: 114 ggggagcaacctagtcagcagcacccctccatagcctctgcatcaactcccgcctccagg 55

                                                                 
Query: 275 ttcctgtcctgattgagttgctgtcctgacttcctttgatgatgaactgtgata 328
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 54  ttcctgtcctgattgagttcctgtcctgacttcctttgatgatgaactgtgata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)