Query= MSMg01no292_e09.b1 MSMg01no292_e09.b1 CHROMAT_FILE:
MSMg01no292_e09.b1 PHD_FILE: MSMg01no292_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:17 2005
(521 letters)
>mm_chr5_35011455_35012375
Length = 921
Score = 948 bits (490), Expect = 0.0
Identities = 510/522 (97%), Gaps = 10/522 (1%)
Strand = Plus / Plus
Query: 5 gaattcaaggcatatctggattacatagtgagattttgtctcaaaagcaaaaccaaaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggcatatctggattacatagtgagattttgtctcaaaagcaaaaccaaaaca 264
Query: 65 caatttgaaatctaaatccttattttttcaaattttacaggatttaacaaacagactggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caatttgaaatctaaatccttattttttcaaattttacaggatttaacaaacagactggt 324
Query: 125 cgtagtaaaaaatggagagagctcctgaagtttcccccagtcagcatgtgcactgaatta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtagtaaaaaatggagagagctcctgaagtttcccccagtcagcatgtgcactgaatta 384
Query: 185 agatggtccatcggtgagtaagtagtgcttccttatatctggagggtgtctgacattgca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agatggtccatcggtgagtaagtagtgcttccttatatctggagggtgtctgacattgca 444
Query: 245 tcattacttagatggtactactactccagttctatatttccttcagaagttttctgataa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcattacttagatggtactactactccagttctatatttccttcagaagttttctgataa 504
Query: 305 aattttcatataatttcattagtcttttgtgtgtaatggagactctagagtgcagttatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aattttcatataatttcattagtcttttgtgtgtaatggagactctagagtgcagttatg 564
Query: 365 aaagaccccc-----gccgactttttcattaataaaaactagtatatattgaggctacag 419
||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaga-----tgattgctgactttttcattaataaaaactagtatatattgaggctacag 619
Query: 420 gattggtttagtggtgaagagcactggatgctcttgcataggacccaggtttggttccca 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 620 gattggtttagtggtgaagagcactggatgctcttgcagaggacccaggtttggttccca 679
Query: 480 gcattgacatgaatgctcacaactgtctgcagctccggatcc 521
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcattgacatgaatgctcacaactgtctgcagctccggatcc 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no292_e09.g1 MSMg01no292_e09.g1 CHROMAT_FILE:
MSMg01no292_e09.g1 PHD_FILE: MSMg01no292_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:17 2005
(289 letters)
>mm_chr5_35163003_35163691
Length = 689
Score = 547 bits (283), Expect = e-160
Identities = 287/289 (99%), Gaps = 2/289 (0%)
Strand = Plus / Minus
Query: 1 cagttttaggggatccagtgccctcttctggcatctgttgctattaccctcacagataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cagttttaggggatccagtgccctcttctggcatctgttgctattaccctcacagataga 575
Query: 61 aactcacactctgacatactctg--acacacacacacacacacacacatatacaccatta 118
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 574 aactcacactctgacatactctgacacacacacacacacacacacacatatacaccatta 515
Query: 119 aaaaaataaaatctttttaaaaaattagatctagaaaaacactactttgaggccattaca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaaaaataaaatctttttaaaaaattagatctagaaaaacactactttgaggccattaca 455
Query: 179 tttctaaaaagaatgatagtcccttcctgagacttaatcactgtttttgttttgattttc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tttctaaaaagaatgatagtcccttcctgagacttaatcactgtttttgttttgattttc 395
Query: 239 tctagttaaattttctgctactgaatgcccaattgtgacttatgatgca 287
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tctagttaaattttctgctactgaatgcccaattgtgacttatgatgca 346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
