BAC Information

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BAC

Clone NameMSMg01-292G18
Chromosome5 (Build37)
Map Location 42,512,722 - 42,513,034
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292G18.T7 (MSMg01no292_g18.b1)MSMg01-292G18.TJ (MSMg01no292_g18.g1)
ACCAG421146AG421147
length764770
length of high quality
(start - end)		317 (45 - 361)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no292_g18.b1 PHD_FILE: MSMg01no292_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:29 2005CHROMAT_FILE: MSMg01no292_g18.g1 PHD_FILE: MSMg01no292_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCCGTAGCACATGGGAGCCTCCTGGAGCTACTGGAATGTCTAGAG
GACAAAGTCCAAAGGCAAGGTATCAGTAATGCCATGCTTCTTGGAAGACT
TGGGACAGAATGCTTCCCTGTTGCCGCTGGACATATGTTGTGGCCCTGTG
CTTGCATCTGCCTACCTTTGGGTCCCTTTCTCTGTTGCCATGTTACTGAA
AATCTCTGCTGCTTCTTACAAGGACATGCTGTAGTAGTGCTAGTTTGTGA
ACTTATCTCAGTGTCCCTAACAATATCTGCAAAGACTATTAACAAACAGG
GATACAGTAACCTGTTTTTACCACCACACCCTCAACATATCTTCATTTTA
AATTTAATGTGTGCCACCCCCCCACAATACAAATGAGGGTTCCCCCTTCC
AGGTTCCTTTTCTAAGAGTTCTTCATGCCATCCTCCAACCCCCTCCCCTT
TGTCTCTGAGAGGGTGCTCCCCCACCCACCCCATTCCCAAACCACCCACC
TCTACCCCCACATCCCTCTTCCCTGGGGCATCAAGTCTCTATAGGATTAC
GTTCATCCTCTGCCATTGAACCCAGACAAGGCAGCTCTCAAGCCAACTAT
GTTGTCAGGGCCCTATACTAACCCATGTTTGCCCTCACCCTGTTTCCTTA
ACCCCTGCAAATAGCCCGGCCCTACTTTTACATTAACCCGTTTCACTTTC
TCCATTCGTTTTTT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAACACCTGAAAAAATATTCAGCATCCTTAATCATCAGGAAAATGCA
AATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACGACAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACAACTCTGGAA
ATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CCGCAATACCTCTCCTTGTTTTATATCCCCACCCACGCTCCAACTGCTCC
ACTATGTTCATAGCAGCCCCCCTCTTGTTTANACAGAAACTGGAAAGAAT
CCGGATGCCCCCCAACAGAGGAATGGATACAAAAAATGTGGTACATTTAC
ACAATGGAGTACTACTCAGCTATTACAAAATGAATTTATGAAAGTCCTAG
GCTTATGGTTGGACATGGAGGGCATTATCCCTATAGAGGCAATCCATTCT
TTATTTAATTCCACTGACACGTACTCTTTGATATGTGTTTATTATTCCAG
ACACTTAGTATACCCACCATATATGTTACAATCCTGCAATATTATTTTAC
TTCTCTATTAACTATTACCATCGTGTGGTTCCTCTTGTTCTCTTTTTTAT
ACTTGCCCTCCCTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_g18.b1 MSMg01no292_g18.b1 CHROMAT_FILE:
MSMg01no292_g18.b1 PHD_FILE: MSMg01no292_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:29 2005
         (317 letters)



>mm_chr5_42512518_42513234
          Length = 717

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctccgtagcacatgggagcctcctggagctactggaatgtctagaggacaaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcctccgtagcacatgggagcctcctggagctactggaatgtctagaggacaaagt 458

                                                                       
Query: 65  ccaaaggcaaggtatcagtaatgccatgcttcttggaagacttgggacagaatgcttccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccaaaggcaaggtatcagtaatgccatgcttcttggaagacttgggacagaatgcttccc 398

                                                                       
Query: 125 tgttgccgctggacatatgttgtggccctgtgcttgcatctgcctacctttgggtccctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgttgccgctggacatatgttgtggccctgtgcttgcatctgcctacctttgggtccctt 338

                                                                       
Query: 185 tctctgttgccatgttactgaaaatctctgctgcttcttacaaggacatgctgtagtagt 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tctctgttgccatgtgactgaaaatctctgctgcttcttacaaggacatgctgtagtagt 278

                                                                       
Query: 245 gctagtttgtgaacttatctcagtgtccctaacaatatctgcaaagactattaacaaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gctagtttgtgaacttatctcagtgtccctaacaatatctgcaaagactattaacaaaca 218

                        
Query: 305 gggatacagtaac 317
           |||||||||||||
Sbjct: 217 gggatacagtaac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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