TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTCTGACCGGATCAGCAGAAGAACTATCAGTGGAGCAGCCAACA
TTGATCTTGGGATGAAAGAAAACGTGATGCAGATTATCTCAGAGCAACGC
ACACTGGCCGTGCTTCTCAGAGGCCATTTAATCCCGAGAAGGCTCTTACT
GAAATATGTCACTCTGGAAGAGCTGTTCCCTAAGTGACATCATATATTAC
CTTTAAGTTATATATTCTTCATAAAGAGCCCCCAAAAGGCCATATAGAAG
CTATTTTCTCTAGTGTTATGAGAAACAGAAAAATGAACACGGGAAAGGTT
GAGATAATTCCAAATTTAACTTTGGCTCATTTTTTTTAATTGTCAAGCCA
ATAAAATTAGAATAAAGAATGTCTACTTAATCCCAACCCTTAGCCCCCTC
ATCAATCTGTGCAGTAACACCTGCTCTCTTTAGGACACTTTATAAACAAT
TCCACAAGTTTTTAACTTGGAGAATCTCCAACACACACCCAATATAAAAA
TAAAATAAAATACACTCATTGCTATTTTTCCCTCACACCAGGGTAGATTT
TTCAAAAGTTCTCTTTAAGGTGGAAAGAATTTTGAGATAGCACATATGAT
GAAGTGGCAGTTACAGGTAAGAAAATCAACCTTCCCTTTGTACATGTATG
TAATCTTGTATACATGTGGTATGTGGTACATGGTAAGGAACCTATGATCT
ACTTTGTAATTTCCAGTGG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCGTGAGATTCCACCTCATACCAGCCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGCTAGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CCGCAATACCTCTCCTGGGCATATATCCATAAGATGTTCCAACTGGTAAG
AAGGACACATGCTCCACTATGCCCATAGCAGCCTTATTTGTAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATAGATACAGAAAA
TGTGGTACATTTACATAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGTCATCATCCTGAA
TGAGGTAACCCAATCACAAAAGAACTCACATGATATATACTCACTGATAA
GTGGATATTAGCCCAGAAACATAGAATACCCAAGATACAAGATAAAATTT
GCAAAACACATGAAACCCAGCTCTTTCTTTAGATGAATGGAAATCACTTG
CCAAATGAAGATTGAAGGTAACAT

Query= MSMg01no293_b12.b1 MSMg01no293_b12.b1 CHROMAT_FILE:
MSMg01no293_b12.b1 PHD_FILE: MSMg01no293_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:23 2005
         (676 letters)



>mm_chr5_21466041_21467117
          Length = 1077

 Score = 1154 bits (597), Expect = 0.0
 Identities = 648/673 (96%), Gaps = 16/673 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtctgaccggatcagcagaagaactatcagtggagcagccaacattgatctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtctgaccggatcagcagaagaactatcagtggagcagccaacattgatctt 264

                                                                       
Query: 65  gggatgaaagaaaacgtgatgcagattatctcagagcaacgcacactggccgtgcttctc 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaatgaaagaaaacgtgatgcagattatctcagagcaacgcacactggccgtgcttctc 324

                                                                       
Query: 125 agaggccatttaatccc-gagaaggctcttactgaaatatgtcactctggaagagctgtt 183
           ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 325 agaggccatttaatccccgagaagggtcttactgaaatatgtcactctggaagagctggt 384

                                                                       
Query: 184 ccctaagtgacatcatatattacctttaagttatatattcttcataaagagcccccaaaa 243
           ||||||| |||||             ||||||||||||||||||||||||||||| ||||
Sbjct: 385 ccctaagggacat-------------taagttatatattcttcataaagagccccaaaaa 431

                                                                       
Query: 244 ggccatatagaagctattttctctagtgttatgagaaacagaaaaatgaacacgggaaag 303
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggccgtatagaagctattttctctagtgttatgagaaacagaaaaatgaacacgggaaag 491

                                                                       
Query: 304 gttgagataattccaaatttaactttggctcatttttttt-aattgtcaagccaataaaa 362
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 492 gttgaaataattccaaatttaactttggctcatttttttttaattgtcaagccaataaaa 551

                                                                       
Query: 363 ttagaataaagaatgtctacttaatcccaacccttagccccctcatcaatctgtgcagta 422
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttagaataaagaatgtctgcttaatcccaacccttagccccctcatcaatctgtgcagta 611

                                                                       
Query: 423 acacctgctctctttaggacactttataaacaattccacaagtttttaacttggagaatc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acacctgctctctttaggacactttataaacaattccacaagtttttaacttggagaatc 671

                                                                       
Query: 483 tccaacacacacccaatataaaaataaaataaaatacactcattgctatttttccctcac 542
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tccaacacacatccaatataaaaataaaataaaatacactcattgctatttttccctcac 731

                                                                       
Query: 543 accagggtagatttttcaaaagttctctttaaggtggaaagaattttgagatagcacata 602
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 accagggtagatttt-caaaagttctctttaaggtggaaagaattttgagatagcacata 790

                                                                       
Query: 603 tgatgaagtggcagttacaggtaagaaaatcaaccttccctttgtacatgtatgtaatct 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tgatgaagtggcagttacaggtaagaaaatcaaccttccctttgtacatgtatgtaatct 850

                        
Query: 663 tgtatacatgtgg 675
           |||||||||||||
Sbjct: 851 tgtatacatgtgg 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1077
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1067
Effective search space:   710622
Effective search space used:   710622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)