CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCGCTCAGTCGGACCCAAGAAGGAGAGTTGCCGGAGTTAGTGATTA
GAGGGCAGAATCTTTGTATCTATGTAGACACCGCCTCTGATGTCCAGTAG
GTAGGATTGTCTGATTTTTGCCATATATTTGAGATATATGAAAATCAAGT
TAAAGAAGTTCATAATCGTTGCAGGATTCGCCTGCCTGAGATGGTTTGCA
TTTTAAGGTGGACTATCTCTGCGGTATACAGCTAAGTACATAGTAGACAA
GGAACCTAAGTAGATTCCCTCAAAAAAACATGCATGAATGGGCAAGAGAT
GCTACAAAAGGCTCCTTTTCTATTCATCACTTGAGCAATCCAAATGAAAG
CCACAGGGAGATAACACTTCAAAGCTGTTGAATGGTTAATACCACAAAGA
AAGAAGAAAAAACTTGCGGACAGTTTGCACAGACTGGGAGATGATACGAA
TTAGGGCAACTATTGTGGAAAACGGTATGAAGTATCTTTATAAACTAAAG
ATAAAACTAGCATATAACCCCTCAACTCCCCTCTAAATAATTACCCAAAG
TACGGGGGGTCAGAAGATCTACATCTCTGTCTTTTCATGTCCCTTGGTCC
AACGTTCATAATAGCCAGTCAGCCTAGGTGTCACTCACAGTCCTCATGAA
CCAACCAAGAGAATGTGCCTGGATTGGGGACACTATACCATAACTGCCAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCA
GAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGTTTATACCCCGAACACGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGAAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGACGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTG
CTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATG
C

Query= MSMg01no293_b21.b1 MSMg01no293_b21.b1 CHROMAT_FILE:
MSMg01no293_b21.b1 PHD_FILE: MSMg01no293_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:25 2005
         (706 letters)



>mm_chr5_17078862_17079966
          Length = 1105

 Score = 1181 bits (611), Expect = 0.0
 Identities = 643/657 (97%), Gaps = 7/657 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccgctcagtcggacccaagaaggagagttgccggagttagtgattagagggcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gaattcccgctcagtcggacccaagaaggagagttgccggagttagtgattagagggcag 594

                                                                       
Query: 65  aatctttgtatctatgtagacaccgcctctgatgtccagtaggtaggattgtctgatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aatctttgtatctatgtagacaccgcctctgatgtccagtaggtaggattgtctgatttt 534

                                                                       
Query: 125 tgccatatatttgagatatatgaaaatcaagttaaagaagttcataatcgttgcaggatt 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 533 tgccatatatttgagatatgtgaaaatcaagttaaagaagttcataatcgttgcaagatt 474

                                                                       
Query: 185 cgcctgcctgagatggtttgcattttaaggtggactatctctgcggtatacagctaagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cgcctgcctgagatggtttgcattttaaggtggactatctctgcggtatacagctaagta 414

                                                                       
Query: 245 catagtagacaaggaacctaagtagattccctcaaaaaaacatgcatgaatgggcaagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 catagtagacaaggaacctaagtagattccctcaaaaaaacatgcatgaatgggcaagag 354

                                                                       
Query: 305 atgctacaaaaggctcc---ttttctattcatcacttgagcaatccaaatgaaagccaca 361
           |||||||||||||||||       | | ||||||||||||||||||||||||||||||||
Sbjct: 353 atgctacaaaaggctccaca----ccactcatcacttgagcaatccaaatgaaagccaca 298

                                                                       
Query: 362 gggagataacacttcaaagctgttgaatggttaataccacaaagaaagaagaaaaaactt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gggagataacacttcaaagctgttgaatggttaataccacaaagaaagaagaaaaaactt 238

                                                                       
Query: 422 gcggacagtttgcacagactgggagatgatacgaattagggcaactattgtggaaaacgg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gcggacagtttgcacagactgggagatgatacgaattagggcaactattgtggaaaacgg 178

                                                                       
Query: 482 tatgaagtatctttataaactaaagataaaactagcatataacccctcaactcccctcta 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 177 tatgaagtatctttataaactaaagataaaactagcatataacccctcaacccccctcta 118

                                                                       
Query: 542 aataattacccaaagtacggggggtcagaagatctacatctctgtcttttcatgtccctt 601
           |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 117 aataattacccaaagtacggggggtcagaagatctatatctctgtcttttcacgtccctt 58

                                                                    
Query: 602 ggtccaacgttcataatagccagtcagcctaggtgtcactcacagtcctcatgaacc 658
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  ggtccaacgttcataatagccagtcagcctaggtgtcactcacagtcctcatgaacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1105
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1095
Effective search space:   762120
Effective search space used:   762120
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)