Query= MSMg01no293_e01.b1 MSMg01no293_e01.b1 CHROMAT_FILE:
MSMg01no293_e01.b1 PHD_FILE: MSMg01no293_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:36 2005
(626 letters)
>mm_chr5_138309745_138310772
Length = 1028
Score = 961 bits (497), Expect = 0.0
Identities = 593/627 (94%), Gaps = 11/627 (1%)
Strand = Plus / Plus
Query: 5 gaattcagaggtgacaatgaaggggctcctcgtggtggtgttgagtgctggggagagatg 64
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaggtgacgatgaaggggctcctcatggtggtgttgagtgctggggagagatg 264
Query: 65 agaactgagcagacattccctggatgagggagggatgggtgagtgtta-atcctgtctcc 123
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 265 agaactgagcagacattccctggatgagtgagggatgggtgagtgttacatcctgtctcc 324
Query: 124 tctatgtgatacgggatgtggaacatctgtcagatgttcacacagagaagggaacagatg 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctatgtgatatgggatgtggaacatctgtcagatgttcacacagagaagggaacagatg 384
Query: 184 cttaaagatgagactctagaagagcaaactcaaatgcacagtccctaactatcctggcgt 243
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct: 385 cttaaagatgagactctagaagagcaagctcaaaagcacagtccctaactatcctggtgt 444
Query: 244 gtgtccacagattttcatttggtcacatgtaactaaggcagaaaaaaaaacattgacttt 303
||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct: 445 gtgtccacagattttcatttggtcacatgtatctaaggcagaaaaaaa--cattgatttt 502
Query: 304 ttt-cacttaaatgtctgtaacatacatttggttg-tctata-acagcttgctgcttggg 360
||| |||||||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct: 503 ttttcacttaaatgtctgtaacatacatttggttaatctatagacggcttgctgcttggg 562
Query: 361 ccttaaacctcaaatttgctccctagtatccataagaagagcctggtgaagtgggcatgg 420
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccttaaacg---agtttgctccctagtatccataagaagagcctggtgaagtgggcataa 619
Query: 421 cctttaatcctggcccaagagacagaggcagtcaaatctctttgagctgagaggcagcct 480
|||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 620 cctttaattctatcccaagagacagaggcagtcaaatctctgtgagctgagaggcagcct 679
Query: 481 ggtctatgtatatagttctacaccaaacagagccgagtgagctgtaatcctagtatggag 540
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct: 680 ggtctatgtatatagttctacaccaaaaagagccgaatgagctgtaatcctagtatagag 739
Query: 541 gaggtggagacaggcttgtccttgcagcttactggccagnc-aacctagtctccttgaga 599
||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct: 740 gaggtggagacaggcttgtccttgcagcttactggccag-ctaacctagcctccttgaga 798
Query: 600 aagttaaagccagtgagaaaacctgtc 626
|||||||||||||||||||||||||||
Sbjct: 799 aagttaaagccagtgagaaaacctgtc 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1028
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1018
Effective search space: 627088
Effective search space used: 627088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_e01.g1 MSMg01no293_e01.g1 CHROMAT_FILE:
MSMg01no293_e01.g1 PHD_FILE: MSMg01no293_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:36 2005
(290 letters)
>mm_chr5_138348677_138349363
Length = 687
Score = 489 bits (253), Expect = e-143
Identities = 279/289 (96%), Gaps = 3/289 (1%)
Strand = Plus / Minus
Query: 1 cttctctctacctctcatggccattctgagccaatgcatatgcccttaacaggggttgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 610 cttctctctacctctcatggccattctgagccaatgcatatgcccttaacatgggttgta 551
Query: 61 agaactgaacacagattcttgcatttgaaaggcaagcacattaccattgatccatctctc 120
||||||||||||||||||| | ||||||||||||| |||||||||||||| |||||||||
Sbjct: 550 agaactgaacacagattctcgaatttgaaaggcaatcacattaccattgacccatctctc 491
Query: 121 tactctctaaaagctcgttcttgaacaccttgattaagtacagcaccgggctaaagcctg 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 taccctctaaaagctcgttcttgaacaccttgattaagtacagcaccgggctaaagcctg 431
Query: 181 atttatcaaaaaaccaaaccaagaccaaccaacgacaaaacccacaaacctcagtccccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atttatcaaaaaaccaaaccaagaccaaccaacgacaaaacccacaaacctcagtccccc 371
Query: 241 ttagtccgccgacatgtaaaaggtgagaagtaaaggaatttaaccctga 289
||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttagt---ctgacatgtaaaaggtgagaagtaaaggaatttaaccctga 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 687
Length adjustment: 9
Effective length of query: 281
Effective length of database: 678
Effective search space: 190518
Effective search space used: 190518
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
