Query= MSMg01no293_k16.b1 MSMg01no293_k16.b1 CHROMAT_FILE:
MSMg01no293_k16.b1 PHD_FILE: MSMg01no293_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:09 2005
(700 letters)
>mm_chr5_99950857_99951957
Length = 1101
Score = 1319 bits (682), Expect = 0.0
Identities = 694/698 (99%), Gaps = 1/698 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttagtgcaaattaatggacagaataatgtgttttctttggcatttttatacat 63
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttagtgcaaattaatgaacagaataatgtgttttctttggcatttttatacat 263
Query: 64 gcacatagtgtattctctaacctagggtcaggctctgcccatgccttgggcatttcaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcacatagtgtattctctaacctagggtcaggctctgcccatgccttgggcatttcaaag 323
Query: 124 caggttctggaagacttgcggtcaatccactcctcacagaagggaagtttcccttcacct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caggttctggaagacttgcggtcaatccactcctcacagaagggaagtttcccttcacct 383
Query: 184 ttgtgaagggcctggctggtctctggtgggcaacattgttgcctgcttactccctaagac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgtgaagggcctggctggtctctggtgggcaacattgttgcctgcttactccctaagac 443
Query: 244 tctccagcacctcagatgggtcctgaagaagtccttaacagatgttcttcctacacagta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctccagcacctcagatgggtcctgaagaagtccttaacagatgttcttcctacacagta 503
Query: 304 ggaaggaaaacacagtatattcctttagcatgagccatgtgaaattgcccttttaaaagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaaggaaaacacagtatattcctttagcatgagccatgtgaaattgcccttttaaaagc 563
Query: 364 aagtcagacatactcaaacacattctaaatttagcttcctatgtaacatgcctcatggat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagtcagacatactcaaacacattctaaatttagcttcctatgtaacatgcctcatggat 623
Query: 424 gtttggatgccttttttttt-aacgcatcctgcaaatgggggaatactcggctgttgtga 482
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 624 gtttggatgccttttttttttaacacatcctgcaaatgggggaatactcggctgttgtga 683
Query: 483 taccacacttccagctctgctttatcagatagctgtggtttcaaagcatgaacaaggtca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taccacacttccagctctgctttatcagatagctgtggtttcaaagcatgaacaaggtca 743
Query: 543 gcactgtttccaaaaaaagagccctagcctggggtgctgagctcattccctagagctcac 602
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcactgtttccaaaaaaagagcactagcctggggtgctgagctcattccctagagctcac 803
Query: 603 aagaagctgctgagagccccatcctccacttggaaacaaagcctcctagatgttcatagt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aagaagctgctgagagccccatcctccacttggaaacaaagcctcctagatgttcatagt 863
Query: 663 ctccttctcgctaagcaaattatggcccagtgttgaag 700
||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ctccttctcgctaagcaaattatggcccagtgttgaag 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1101
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1091
Effective search space: 752790
Effective search space used: 752790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_k16.g1 MSMg01no293_k16.g1 CHROMAT_FILE:
MSMg01no293_k16.g1 PHD_FILE: MSMg01no293_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:09 2005
(288 letters)
>mm_chr5_99988746_99989433
Length = 688
Score = 549 bits (284), Expect = e-161
Identities = 287/288 (99%)
Strand = Plus / Minus
Query: 1 aggccttcctcagatcctgcctcctcattagaatagagactgacacttgaattcagtggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aggccttcctcagatcctgcctcctcattagaatagagactgacacttgaattcagtggt 429
Query: 61 gggcagaggaattctgccaccagatttctgtttcctgggggaaatctcattgcaacgcat 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 428 gggcagaggaattctgccaccagatttctgtttcctgggggaaatctctttgcaacgcat 369
Query: 121 ggaattcagggtcacttctacaagctcagttagaggtctgacctgttgctttcagctagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggaattcagggtcacttctacaagctcagttagaggtctgacctgttgctttcagctagg 309
Query: 181 ggaagttttgtccccaggaaatgtttggaaatgtctcaagacaggctcgtgttacaattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggaagttttgtccccaggaaatgtttggaaatgtctcaagacaggctcgtgttacaattg 249
Query: 241 aagcagacaaaaggatattattggccccagggaaatagaattcagaag 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aagcagacaaaaggatattattggccccagggaaatagaattcagaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
