BAC Information

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BAC

Clone NameMSMg01-293P01
Chromosome5 (Build37)
Map Location 131,091,528 - 131,091,812
singlet/doubletsinglet
Overlap geneCaln1
Upstream geneMmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneWbscr17, Auts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293P01.T7 (MSMg01no293_p01.b1)MSMg01-293P01.TJ (MSMg01no293_p01.g1)
ACCAG422252AG422253
length777766
length of high quality
(start - end)
319 (46 - 364)303 (76 - 378)
definitionCHROMAT_FILE: MSMg01no293_p01.b1 PHD_FILE: MSMg01no293_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:30 2005CHROMAT_FILE: MSMg01no293_p01.g1 PHD_FILE: MSMg01no293_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTGTTTGGCAGCAGGGGAGACAGGGTCTTATTATGTAGTCCAG
GCTGACTTTGGACTTGCGTTATTCCTCCATACCTCACTCTCCAAGGGTAG
AGGGTACACATGAGCCATCACTCTTGGCCTCTGTTAAATTCTTTTAAAAA
AGATATATTTGTGTGTGTGTATGTGTGTGTGCATGTGTGCGTGCCCGCAT
GTGCACCTGTTGTATGTACTTTATTATGAGTGTATTCATCATGTACACCT
ATGCAGAGCCAGAAGACATCAGACCCCTTCCTTTATTGCTCCCTGCCTTA
GTTTCTGAGACAGGTTTTGTTCCGGACGCAGCCTGTCTGGCCGGGGGAGC
TCATAGCTTCTACCTGCCTCCATCTAACAGCTCTGAAATGACAGGTGCAC
ATGTGACTGCTTCCAGATTTTAAGTGGGTACTGGAGATTTGGACCCAGGT
CCTCTTGCTTTCATAGCAAGTGCTCTTACCCACTGAGCCATCTATTTAGC
CCTGCTCTGAAATTTTAATGTCAAAAATCCCATGGTTCTGATTAGGAAAC
ATGATGCTATGTTGATTTTGCCCGGGTCTTTCTGATCAATGTGCCTTTTG
TTTTGGCTTTAGTTCTGAACGTTTCGTCTTTTTTACGTTTGGGTATATAG
TTTAATTTGTTCCAACTGTTCTGTCTTCTTTACTGCAGTATCTCCTTGAT
TTCCACTTCTTTTACACTCATGTTGAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAACGGATTAGGACTCGGCACTCCT
AAGGACTGTTTTCAGGTTGATTGTACTCTTCCATCCCGAGCTTCTTCTTC
TTCAGACAGCTTCCTTTCCTTGCTAAAGTCATATGGAGCTTTTGTGTCCC
CCTCTTATTTCATTTCTGCTACTGTCATAAAACACCCTGACCCTCACTCA
GAGTCATTGCTCCAGGTCAAAGACCATCACTGCGGCCCAGCAGCTGAACT
CATCCATTGTCAAGAGCAGAGAGAAACAAATGCACACATGTTGCCTGCTT
ACTAGCTATGCTCATTTTTTTTTCCCCACCCCCCCACAGCTCAGGGTTCA
GCCCAGGATTTGGTGCCCTCCGAAACAAAAAGAAAATAGCCCATCGGGGA
GGGTCAAGACAATCCCCCACAGACATGCCCACCAGTCAACTTAATCGAGA
TAACTCCTCACTGAGACCCTTCCCAAACGATCCCATGGTGTAGAAGCTGT
ATAACGTTTAGGTTAAAATCGAGTAGCCTACTTTTGATTCCTGAACAATG
TCTTTGCTTGGTCAAGTGATGCCTGTCTCTTAACCGGTTAACTTCTTCGT
AAAGTAATCACCCCTTTCACGTGAAATCCAGCATTGTTCTCATCACTGTA
TGGCTGGCTGGGTGGAAAGGAAAATAGTTGACGTTTTGTTGTCCACCTTT
CCTAACTGCTAGTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_p01.g1 MSMg01no293_p01.g1 CHROMAT_FILE:
MSMg01no293_p01.g1 PHD_FILE: MSMg01no293_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:30 2005
         (303 letters)



>mm_chr5_131091324_131092026
          Length = 703

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggattaggactcggcactcctaaggactgttttcaggttgattgtactcttccatcccga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggattaggactcggcactcctaaggactgttttcaggttgattgtactcttccatcccga 430

                                                                       
Query: 65  gcttcttcttcttcagacagcttcctttccttgctaaagtcatatggagcttttgtgtcc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 429 gcttcttcttcttcagacagcttcctttccttgctaaagtcatatggagcctttgtggcc 370

                                                                       
Query: 125 ccctcttatttcatttctgctactgtcataaaacaccctgaccctcactcagagtcattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ccctcttatttcatttctgctactgtcataaaacaccctgaccctcactcagagtcattg 310

                                                                       
Query: 185 ctccaggtcaaagaccatcactgcggcccagcagctgaactcatccattgtcaagagcag 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 309 ctccaggtcaaagaccatcactgcggtccagcagctgaactcatccattgtcaagagcag 250

                                                        
Query: 245 agagaaacaaatgcacacatgttgcctgcttactagctatgctca 289
           |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 249 agagaaacaaatgcacccatgttgcctgcttactagctatgctca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)