BAC Information

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BAC

Clone NameMSMg01-294J18
Chromosome5 (Build37)
Map Location 101,637,696 - 101,638,013
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
Downstream geneLOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294J18.T7 (MSMg01no294_j18.b1)MSMg01-294J18.TJ (MSMg01no294_j18.g1)
ACCAG422738AG422739
length717711
length of high quality
(start - end)
320 (54 - 373)287 (84 - 370)
definitionCHROMAT_FILE: MSMg01no294_j18.b1 PHD_FILE: MSMg01no294_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:19 2005CHROMAT_FILE: MSMg01no294_j18.g1 PHD_FILE: MSMg01no294_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTGAAATTATATGTAGAATATTTTATTACTTAAAAAA
AAAGACCAGACTTTTGTGCAAACTTTTGGTACCGACATTGTTGAGTTAAA
CATAGTGAGACAGTCAGCCAGCTGTAACTAACTGTCTTGGGCTGAGCCAT
TATTTGATGTACTGTAAGCAAATGACCAAACAAAATGAGCTGGGGCAACC
TAAGCTGCATTTTATTTACTGTGAAGTAATTGTAATCATCTGCAATTTCT
CTCCTTGTTCTACCGTGTGTGTGTGTGTGTGTGTGTGGTATGCTATATGA
AATGCCAACTTATTTGACTAATGTTGTACCACCCCCTCGCCGTCCTGGAT
CTGATGAACAATACAAACAGTTGTTAAGAGGTGATAGAAAAAGGAAGCAT
CTTTGAAACACTTGTAATTTATTTATAATTAAGAATAATGAAGACTACTA
AGCATAATCTTCAGAATGTTTTTATTCATTCTTTGAAAGTTTTATATTAT
ATTTTGATCACATTCACCTCCCCTTTCCCAACTCCTCACAGACCTACTCC
ACATTCTGTGTCCACCCCAACTTTATACCTATATTCTTTTAAACCCACCA
TGTCCAATTAGTGCTGCCTATATATTCTTGGGTATATAGCCCTTAGGTGT
CTCCCTACCATGTGCCG
NNNAAAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGACGAATACTG
AATGGCTGAGAAGCACCTGAAAAATTGTTCCCCATCCTTAATCATCAGAG
AAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA
AAGAGGAATACTTCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTAGTACCT
GATGATCCCGCAATACCTTTTCTGGGCATATATCCAGAAGATGTCCCAAC
CGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTACTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACAATCACAAAAGAACTCAAATGATATGTACTCA
CTGATAAGTGGATATTAGCCCAAAAACTTAGTATACCCGAGATATAAGAT
ACAATTTGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_j18.b1 MSMg01no294_j18.b1 CHROMAT_FILE:
MSMg01no294_j18.b1 PHD_FILE: MSMg01no294_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:19 2005
         (320 letters)



>mm_chr5_101637492_101638211
          Length = 720

 Score =  574 bits (297), Expect = e-168
 Identities = 313/319 (98%), Gaps = 4/319 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgaaattatatgtagaatattttattacttaaaaaaaaa-gaccagacttttg 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattcttgaaattatatgtagaatattttattacttaaaaaaaaatgaccagacttttg 264

                                                                       
Query: 64  tgcaaacttttggtaccgacattgttgagttaaacatagtgagacagtcagccagctgta 123
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcaaacttttggtag-gacattgttgagttaaacatagtgagacagtcagccagctgta 323

                                                                       
Query: 124 actaactgtcttgggctgagccattatttgatgtactgtaagcaaatgaccaaacaaaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actaactgtcttgggctgagccattatttgatgtactgtaagcaaatgaccaaacaaaat 383

                                                                       
Query: 184 gagctggggcaacctaagctgcattttatttactgtgaagtaattgtaatcatctgcaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 384 gagctggggcaacctaagctgcattttatttactgtgaagtaattgtaatcatctgcaag 443

                                                                       
Query: 244 ttctctccttgttctaccgtgtgtgtgtgtgtgtgtgtgtg--gtatgctatatgaaatg 301
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 444 ttctctccttgttctaccgtgtgtgtgtgtgtgtgtgtgtgtggtatgctatatgaaatg 503

                              
Query: 302 ccaacttatttgactaatg 320
           |||||||||||||||||||
Sbjct: 504 ccaacttatttgactaatg 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)