BAC Information

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BAC

Clone NameMSMg01-294M11
Chromosome5 (Build37)
Map Location 142,166,298 - 142,166,491
singlet/doubletsinglet
Overlap genenone
Upstream geneIqce, AA881470, 6530401C20Rik, Gna12, Card11, LOC623466
Downstream geneSdk1, LOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294M11.T7 (MSMg01no294_m11.b1)MSMg01-294M11.TJ (MSMg01no294_m11.g1)
ACCAG422863AG422864
length866746
length of high quality
(start - end)
72 (42 - 113)194 (116 - 309)
definitionCHROMAT_FILE: MSMg01no294_m11.b1 PHD_FILE: MSMg01no294_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:32 2005CHROMAT_FILE: MSMg01no294_m11.g1 PHD_FILE: MSMg01no294_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGAAGTAACCAGAGGCAACATGGTGGTCTTTTTTTTTTCTTTTTGTTT
TTTACAAATGTGTTTGCCCGTATAGATGTGTGTGTGTATTTGTGTGATAT
CAAAGTTTTATATACAAATATCATATTTTATAGATAATACATTAACACTT
GCACTCTCACCATCCCAATCATACATCCACCACTTTACCAATCCCTCATT
TTTTTCCCCCAACCAACCCCAACTCTTCCTCACTCTTTTTCACAGCGACC
CTCACACTCACACCACTTTTTTTTACAACACACACACTCCTCCCCCCCCC
CTCCACTATTTTTTTTTTCTCCCCCCCCCCCCCCCTATTGTTATTCTACC
ACAACCACAAAAAGATTCTCCCCCCCCCAAAAAAAAAAAAATACTTTCTT
CCCTTTCCGTGGTCCTTCCATTTTCCCAAACATTACTCCTTCTCTCCCAC
TACTATCTCCCTACCCCCCCTCATCCTATCTACACCTTCCTTTCATCCCC
TCCCACCCCACCCATCCTTTCCCCCCCTCTTTCCCATCTTTACCCCTCCT
CCTCCACCTTACCATACTCACTATAAATACCACACCTACTCTCTCCCCAT
CTCATTACTCCTCCCCACTTCCCATTTATCCCCCCTATACAACTCTCACA
TCACCACCTTACTCTATTCTCCTACTTCCACCCTCTATTTATTATAACAC
ATTCCCCTCCCTTACTTCATCAAATTATCTTTNACTCTATTATCACACAT
ACCACCATCCCTCACATCTCACCACTTACACCCCATCTCTCTCTATCCTT
TCCCCTTTATTTCTTT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGAGCTAGAGGCAGGGGAATCAGTGGCTCGTGG
TTAGCACGTTTTGCACAAAGAGTTTGCGGCCAGCCTAGGATACTTGAGAT
TGTGTCTCAGTTTGTTTGTTTTGTTTTGTTTTAAATAGAAGGAGTGGGTG
GGAGTGTGGCAGGTAATTTAAAGGATGATATAGGACTTGTGCCACTCAGT
CATCCAGCCAGAGTCAACGGTAGCTCAGTTGTGAATGGGGTATCTTCCCC
TCAACTCTAATTTTTTCTGTGTATCTTGTCAGATAGCCCTAAGAATGATT
TAGAGTCCNCGTCCCGACCAGCCCCCGCATTTGATTTGTGGGANAATGTT
TTTGCACCCCCCTGTAAAAAAAAAAAAAAACACAGAGGTGGCGGGGAGCC
CCTCTTCTTCACCGAGCTTATCTATAGCAATGTGAGAGCATGACTGCGGA
GCTATTCTCGTGTGCACTTATTCACTCACACTCACGTTGCATGCACATGT
ACAGCACAAACTATGTATGCTTGTGTGCTCCCTCTCTTATTATCCTCTTT
TTCCGAATCCCTACTTTTGCCGTTGTTTTCCTGGTTTCCTTCTTCACCCT
TGTATTTTTCCGTTTTATTCGATCAAGCCACTTGAAAATTCTCCCTGCTG
TTCCTCTTTCGTCCCCCTTGTTTCTTGCTTAATCTCCTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_m11.g1 MSMg01no294_m11.g1 CHROMAT_FILE:
MSMg01no294_m11.g1 PHD_FILE: MSMg01no294_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:32 2005
         (194 letters)



>mm_chr5_142166098_142166691
          Length = 594

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagagtttgcggccagcctaggatacttgagattgtgtctcagtttgtttgttttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagagtttgcggccagcctaggatacttgagattgtgtctcagtttgtttgttttgtt 260

                                                                       
Query: 61  ttgttttaaatagaaggagtgggtgggagtgtggcaggtaatttaaaggatgatatagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttttaaatagaaggagtgggtgggagtgtggcaggtaatttaaaggatgatatagga 320

                                                                       
Query: 121 cttgtgccactcagtcatccagccagagtcaacggtagctcagttgtgaatggggtatct 180
           |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 cttgtgccacacagtcatccagccagagtcaacggtagcacagttgtgaatggggtatct 380

                         
Query: 181 tcccctcaactcta 194
           ||||||||||||||
Sbjct: 381 tcccctcaactcta 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)