BAC Information

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BAC

Clone NameMSMg01-294N23
Chromosome5 (Build37)
Map Location 85,137,784 - 85,138,088
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294N23.T7 (MSMg01no294_n23.b1)MSMg01-294N23.TJ (MSMg01no294_n23.g1)
ACCAG422932AG422933
length737735
length of high quality
(start - end)
326 (49 - 374)292 (80 - 371)
definitionCHROMAT_FILE: MSMg01no294_n23.b1 PHD_FILE: MSMg01no294_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:39 2005CHROMAT_FILE: MSMg01no294_n23.g1 PHD_FILE: MSMg01no294_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTTCTTCAACCTTTTGATCATGGTAACACTCACTCTGCCAC
TGTGTGTAAACATTCTGTATTCCTGAACTAATTATCCCACAACTCTTCAA
TCATACCATGGCTCTTAAAAAAACAAAAACAAAAACAAAAAACAAACAAT
CAAACGAAAAAAAAACCAAAACAAAACAAAAAACATTTTCCTGTATTTCA
GCAGAAAGGAAGGAAAAAATGAAAGAAAGGAAGAAAGGAAGAAAGAAACG
AAAGTATTAAACTTTTGAGAGCTACTAGATTCAAGTTGGAATAGATTTCA
CTCTTCTGTACTTTGTTTGGCATTTTTTTCTTACCACCCCCCATTTAAGA
AAAAGTGCCATCTTCTTCTCTGAATGAGGAGATCTTCAAAAATAAGAGCT
TAAGTTTTATTTATGCATTTCCATAGTCTTTATGGAGCACATAAAACCAG
GATTGTTCATCTGAGAACATCAATTTTGTATTATATTATAGTATCCAAAT
AGCAAATGCATTTGTCTCCTTCTTTGTGCCTTTGAAATTGCCTAAAAAGA
GGAACCTCTGGAAAAATTGAAGAAGAAAAAGAAGAATGCAGGTTTGCAAA
CCAGTAACTGAGTTTCTCACGAAGAATTTCAGAATGAGTGTTGTAGAGCT
GTTGCCACTTTAAGCATCTAATACTGGATATCTATAA
AAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAAATTGAATG
GCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTTCTCTATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG
GAAAGCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACAGGAGG
ATCCCATAATACCTCTTCTGGTTTTATATCCACCACACGCCTTAACCGAT
AAGAAGGACACATGCTGCACTATGTTCATAGCAGTCTTATTTGTAATAGC
CAGAAGCTGGAAAGAACCCAGATATCCCTCAAAAGAGGAATGGATACAAA
ATATGTGGTACATTTACACAATGGAGTACTATTCAGCTATTAAAAGGAAT
GAATTTATGAATTTCCTAGGCAAATGGATGGACCTGGAGAGCATCATCAT
GAGTGAGGTAACCCAATCACAAAAGAACTCACATGATATGTACTCAGTGA
TAAGTGGATATTAGCCCAGAAACTTAGAATGCCCAAGTTACAAGACACAA
TTTGCAAAAGACATGAAACTCAAGAAGAACGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_n23.b1 MSMg01no294_n23.b1 CHROMAT_FILE:
MSMg01no294_n23.b1 PHD_FILE: MSMg01no294_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:39 2005
         (326 letters)



>mm_chr5_85137770_85138494
          Length = 725

 Score =  497 bits (257), Expect = e-145
 Identities = 301/323 (93%), Gaps = 20/323 (6%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatttcttcaaccttttgatcatggtaacactcactctgccactgtgtgtaaac 63
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 319 ggaattcatttcttcaaccttttgatcatggcaacactcactctgccactgtgtgtaaac 260

                                                                       
Query: 64  attctgtattcctgaactaattatcccacaactcttcaatcataccatggctcttaaaaa 123
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||
Sbjct: 259 attctgtattcctgaactaattatcccacaactcttcaatcataccat-gctctt--aaa 203

                                                                       
Query: 124 aacaaaaacaaaaacaaa--aaacaaacaatcaaacgaaaaaaaaaccaaaacaaaacaa 181
           ||| ||||| ||||||||  ||||||||||||||||      ||||  ||||||||  ||
Sbjct: 202 aac-aaaac-aaaacaaaacaaacaaacaatcaaac------aaaa--aaaacaaa--aa 155

                                                                       
Query: 182 aaaacattttcctgtatttcagcagaaaggaaggaaaaaatgaaagaaaggaagaaagga 241
           ||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 154 aaaa---tttcctgtatttcagcagaaaggaagaaaaaaatgaaagaaaggaagaaagga 98

                                                                       
Query: 242 agaaagaaacgaaagtattaaacttttgagagctactagattcaagttggaatagatttc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  agaaagaaacgaaagtattaaacttttgagagctactagattcaagttggaatagatttc 38

                                  
Query: 302 actcttctgtactttgtttggca 324
           |||||||||||||||||||||||
Sbjct: 37  actcttctgtactttgtttggca 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 725
Length adjustment: 9
Effective length of query: 317
Effective length of database: 716
Effective search space:   226972
Effective search space used:   226972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)