BAC Information

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BAC

Clone NameMSMg01-294O18
Chromosome5 (Build37)
Map Location 37,812,774 - 37,813,065
singlet/doubletsinglet
Overlap geneEvc2
Upstream geneGrpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc
Downstream geneLOC100040355, LOC100040988, Stk32b, Cytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294O18.T7 (MSMg01no294_o18.b1)MSMg01-294O18.TJ (MSMg01no294_o18.g1)
ACCAG422964AG422965
length750739
length of high quality
(start - end)
318 (37 - 354)287 (67 - 353)
definitionCHROMAT_FILE: MSMg01no294_o18.b1 PHD_FILE: MSMg01no294_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:42 2005CHROMAT_FILE: MSMg01no294_o18.g1 PHD_FILE: MSMg01no294_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTT
CATTGAGTCCTTGGTATAAGCAATCCTGTACAGGCCCAGTACATGTAACC
ACATCCACTGTGAATGGATGACTATAATGGATGTGTCATGCCTAGAAGAT
GTCATGTTGTGCCCTGTCTTCCTGTCTTTCAGCTCCTACATTCTTTCTAC
CCTCTCTTTGTTGTCATTCTCTTACCTGCCTTAGAGATGGTGGTATGGTA
TATTTGTCTGGTTTAAGGCTGAGCACTTAACCAATATTTATTCTCAGCAT
CTTGAGCATCCATTCTCTGTATTTACTGTCATTCAATAAAAAGACAGGCT
TCTGTGATTTTTACCCACCCCCCATTTGTCTAGAGATATGAACATAAATA
TTTACACCCCAGTTTGATAAAAAATCAATTTAGGTATATATGTATGTATG
TATATATGTATATGTATGTATATACACTTATTTTATACATATATGTATTT
ATCTATATTATATATAGTATATGTACTATAAACATATGTAATATTATATA
TAGTATAATATATAATTATGCTCCTTCTTTTTTTCCTATATTTTCCTATT
ATTTCATCTTTTTTTCTCTTTCTTTTCTATCCTGTTTTTTAATTCACCCC
TTTCCTTTTTTTTTTATTTAATCCCTTCCCCTTATTTCTCATCCTTCCTT
TATGTTCTTTCTATCTCCCCCCCCTTTTCCTCTTATTACTTTTTTTATTT

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACCTGCATTGTGTGTGCACCCTGAGGCCAGGGG
ACACAGCAGTCAGCACATGCTGTCAGGACACCACCACAGAACTCTCTGCA
CTGCCTGCCTCCACCTGATAGATGCTGTCTGTCACCACCACCCTCCAGGC
AGGGATTATCTGTGGACCAGGCCTGAGATTGACACTCAGCAAATCTCTCA
GGGTTCTAGGTGGCATCCAGCAGCCACCTCAGGGATGGTGCCAGATGGGT
TTTTTTGAGAATCATATTTTATTCTTTTTTTTTTTTAAACTGTAACCCGT
TCCNNCTGCTTCACCCCCAACCACCCCTGGTGGAAGGCTTTGGACAGCAG
ATTCACACCCCATCTGAAAAAAAAAAAACTGGAGAGGATGCTCTGGGCCC
GCCGGAAGAAGGAGAGGTGAGGAGCTGGGGAAGGAAGGGCCTCCAGGGCG
TGGCCAAGTTGCCAGGGAGGGGATAGAAGGTGTGAAGTTCTTTCCTAAAA
AAAAACATGCCTATGTTCTTGGTCTTAGTTTAACAGCTGAAGACAAATCT
ATAGCTCTCAGGAGAAGAATGTTCTCCTAAAATTTATTAGCGCTTTAATT
ACTGTATTTATTTTACCTAATACCAGCTTTTAATGATATATAATCACCAA
AAAGATTAATTTTTTAAGGCTCTTCTAACTTTACCGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_o18.g1 MSMg01no294_o18.g1 CHROMAT_FILE:
MSMg01no294_o18.g1 PHD_FILE: MSMg01no294_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:42 2005
         (287 letters)



>mm_chr5_37812574_37813265
          Length = 692

 Score =  518 bits (268), Expect = e-151
 Identities = 284/292 (97%), Gaps = 5/292 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctgcattgtgtgtgcaccctgaggccaggggacacagcagtcagcacatgctgtcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacctgcattgtgtgtgcaccctgaggccaggggacacagcagtcagcacatgctgtcag 260

                                                                       
Query: 61  gacaccaccacagaactctctgcactgcctgcctccacctgatagatgctgtctgtcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaccaccacagaactctctgcactgcctgcctccacctgatagatgctgtctgtcacc 320

                                                                       
Query: 121 accaccctccaggcagggattatctgtggaccaggcctgagattgacactcagcaaatct 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaccctccaggcagggattatctgtggaccaggcctgagattgacactcagcaaatct 380

                                                                       
Query: 181 ctcagggttctaggtggcatccagcagccacctcagggatggtgccagatgggttttttt 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcggggttctaggtggcatccagcagccacctcagggatggtgccagatgggttttttt 440

                                                               
Query: 241 gagaatcatattttattctttttttttttt-----aaactgtaacccgttcc 287
           |||||||| |||||||||||||||||||||     |||||||||||||||||
Sbjct: 441 gagaatcagattttattctttttttttttttttttaaactgtaacccgttcc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 692
Length adjustment: 9
Effective length of query: 278
Effective length of database: 683
Effective search space:   189874
Effective search space used:   189874
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)