BAC Information

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BAC

Clone NameMSMg01-294P14
Chromosome5 (Build37)
Map Location 10,782,820 - 10,783,051
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream geneLOC100042768, LOC625446, LOC435832, LOC381612, EG625586, LOC242809
Downstream geneLOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294P14.T7 (MSMg01no294_p14.b1)MSMg01-294P14.TJ (MSMg01no294_p14.g1)
ACCAG423000AG423001
length733728
length of high quality
(start - end)
244 (444 - 687)607 (80 - 686)
definitionCHROMAT_FILE: MSMg01no294_p14.b1 PHD_FILE: MSMg01no294_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:46 2005CHROMAT_FILE: MSMg01no294_p14.g1 PHD_FILE: MSMg01no294_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTAGTTTACACTTTAGTACACACTCAAACAATGACTTCTA
ATTGTGGGGTAGGCAAATTTATTAGCCCCAGAAATATTTGTCAGACTGAG
TCAGAGATAAAACACAAAAAATCTCTCAGAAGAAAAGCTATTAAAACCAG
CACTGGGAGAATGAAGTTTGGTGCATTCAGTCAGCTAGCTGGGAGTCAGT
TCAGTGAGTGCAGTTCAGTGGAGTTGAGATTGTTTTTGAGTTTGTGCAGT
TCAGTGCTTGACAGCAGTAGAAGCTGATTTCTGAGAATAAGAGAGAGGCA
GAATATTATAACACANNNCTAGATGTCCNTTCAGGCCTTCCAGAGCAGTT
CAGTGAGAAGCTGAGAGAAGGTATATTGAAACAAAAAAAATTGGAGAAGA
GGGGGAGAGTTTGTTCCAGAACAGCTGAGTGGAACCAGCTAGTCACAGTT
CAGCGGGGGCTAGAAATCATGAGATTATTTAGCAGTAAGTCTCAGAGATG
ACAATTACATCAGGCAAATAGAAGTTACATTTACATATTAGACCCCAGTG
GACTTATATTACATTGTAATTACATTACAGTGCACATTACATGTTTACTT
GTAAACCCCTAGTAATTTCACTGTACACAGCTAGGCGATATTTATGAATT
CTGACTAGACCCAGGTATATGAAATTATTATTC
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATCCTTAAGACCCTTAAC
CCATAAAAACTCCTAGCTTCCTAGCCTCGTGGCCATCATCCGTTATCTCC
TGTGTGGGATGCATGTCAGCCAGGAGCTCCATAATTAAATGACCTCATGT
AATTACATCAAGATGGTCCTTCACGATTTTTTGGGTGCACGCCGAATCGG
GTATTGAGTTGGGGTTTCCCCACTACGTTCTATCACTAGCAACTAACCAT
TGAGAGTAGTTCCACCATAAGGGACATGGCATGAAGAACACCCTTATTAT
CTATGCTCAGATTAGGCTTGCTGTGTTTTCAGCAAGTCTTGTGCAAGTAG
CAACACATGAGCTCCTCTCAGTTCATGAGTGTAATAGTTATGTCATCCTT
AGGAGACAGAATATCCTAGCACTCTTCTTCACCCTTAAGACCTTCCATTC
TTTCTACTTCCTCTTCAACAGGGTTTCCACAGCTTTGGCCAAGCTTGGAG
GGGCACAAGTGTTAACTTCTATGCTCCATTCAGGCCTGAGTCCTCGGTCT
GTGATTCTCTGCACTTTGACCAGAAGCATCTCATCTTTCATTATTTACTT
CACATGGAAAGAAAAGTTGATCTGACAAAGTTTAAGAACAGTCTGTATCT
ATGAGTTTATTTAGAAGGTATTTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_p14.b1 MSMg01no294_p14.b1 CHROMAT_FILE:
MSMg01no294_p14.b1 PHD_FILE: MSMg01no294_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:46 2005
         (244 letters)



>mm_chr5_10782608_10783251
          Length = 644

 Score =  420 bits (217), Expect = e-122
 Identities = 229/233 (98%), Gaps = 2/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  agagtttgttccagaacagctgagtggaaccagctagtcacagttcagcgggggctagaa 72
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 213 agagtttgttccagaacagctgagtggaaccagctagtcacagttcagcgggagctagaa 272

                                                                       
Query: 73  atcatgagattatttagcagtaagtctcagagatgacaattacatcaggcaaatagaagt 132
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atcatgagattatttagaagtaagtctcagagatgacaattacatcaggcaaatagaagt 332

                                                                       
Query: 133 tacatttacatattagaccccagtggacttatattacattgtaattacattacagtgcac 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tacatttacatattagaccccagtggacttatattacattgtaattacattacagtgcac 392

                                                                
Query: 193 attacatgtttacttgtaaacccctagtaa-tttcactgtacacagctaggcg 244
           ||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 393 attacatgtttacttgtaaacccctag-aagtttcactgtacacagctaggcg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)