BAC Information

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BAC

Clone NameMSMg01-295M04
Chromosome5 (Build37)
Map Location 6,894,330 - 6,894,621
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041208, EG435830
Downstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295M04.T7 (MSMg01no295_m04.b1)MSMg01-295M04.TJ (MSMg01no295_m04.g1)
ACCAG423564AG423565
length781737
length of high quality
(start - end)
298 (50 - 347)289 (83 - 371)
definitionCHROMAT_FILE: MSMg01no295_m04.b1 PHD_FILE: MSMg01no295_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:47 2005CHROMAT_FILE: MSMg01no295_m04.g1 PHD_FILE: MSMg01no295_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCATCCTAAATCTTCTATTTGTCACCTTGCATAAACTTGAG
TAAGCCATTTCCTCTAGTAAGCATGCCCATTTCTAGATGAATATCTATGA
TCCTTTCAAACTTAATGTCCTCAAATGGTTCTACTCTTAGAATGTTCTTA
TGTTTAACATGGAACCACAGATACTTTCTTTTGTATGTAGGTCTTATTCT
AGACAGCCTCTATACATACCACCTGCACGTGTGTTTGTACATACACACTT
GTGCACGTGTGCTCACACACACACACACACACACACACACACATGAAGAG
AAGANGAGAGAGAAGATATTTTTTTTTTTACCCCCCCCCCCCCCCGCAGA
GAGAGAGAGAGAGAGANAAGAGANNANNNCCCCCCCCCAATAAAAAAAAA
AAAAAAAAAAAAGCGCGCCCCCCCGCGGGGGGGGTGGCCGGCGCGCTTTC
TCCCACCCACTTTTTTTTTACACCTCCATCACCCCCTACCTTTAATCTTT
TATTTTTTTCACTTCCCTATCCTCTTTCTTTTTGTATCAATCCACTATTA
ACTTTATTTTATTATTCGCACCCGTCCCCCCCCGCTCTTCTGTATTCTTT
TTCAATCCACTTATCCCCCTTTCTTCTTTTTTTCCTCTTTTTTTTTTTGT
AAGGGATCNTGCCCTCTTCCATCTTTCTTCTCCCCCACATCCCCTCTCCT
ACTTCTTCTCTTTTGTAATCCCCCATTTTGT
NNCCGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCACTCAGAATGT
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACT
CTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTTTTGGGCATACCCCCCCACACATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCATAAAAAAATTATTTATAG
TGGGGGGAGGGTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGATACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCA
CTGATAAGTGGATATTAGCCCAAAACCTACGATACCCAAGATATAAGATA
CAATTTCCTAAACACATGAAACTCTAGAAAAATGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_m04.b1 MSMg01no295_m04.b1 CHROMAT_FILE:
MSMg01no295_m04.b1 PHD_FILE: MSMg01no295_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:47 2005
         (298 letters)



>mm_chr5_6894156_6894855
          Length = 700

 Score =  538 bits (278), Expect = e-157
 Identities = 288/292 (98%), Gaps = 2/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatcctaaatcttctatttgtcaccttgcataaacttgagtaagccatttcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gaattctcatcctaaatcttctatttgtcaccttgcataaacttgagtaagccatttcct 407

                                                                       
Query: 65  ctagtaagcatgcccatttctagatgaatatctatgatcctttcaaacttaatgtcctca 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 406 ctagtaagcatgcccatttctagatgaatatctatgatcctttcaagcttaatgtcctca 347

                                                                       
Query: 125 aatggttctactcttagaatgttcttatgtttaacatggaaccacagatactttcttttg 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aatggttctactcttagaatggtcttatgtttaacatggaaccacagatactttcttttg 287

                                                                       
Query: 185 tatgtaggtcttattctagacagcctctatacataccacctgcac--gtgtgtttgtaca 242
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 286 tatgtaggtcttattctagacagcctctatacataccacctgcacatgtgtgtttgtaca 227

                                                               
Query: 243 tacacacttgtgcacgtgtgctcacacacacacacacacacacacacacaca 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tacacacttgtgcacgtgtgctcacacacacacacacacacacacacacaca 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 700
Length adjustment: 9
Effective length of query: 289
Effective length of database: 691
Effective search space:   199699
Effective search space used:   199699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)