Query= MSMg01no295_n20.b1 MSMg01no295_n20.b1 CHROMAT_FILE:
MSMg01no295_n20.b1 PHD_FILE: MSMg01no295_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:55 2005
(239 letters)
>mm_chr5_80725008_80725646
Length = 639
Score = 447 bits (231), Expect = e-130
Identities = 234/235 (99%), Gaps = 1/235 (0%)
Strand = Plus / Plus
Query: 1 aaaatatattttttaaaaaagtatatcttttaaaataacttacaactatggaaagtaaag 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaaatatatttttt-aaaaagtatatcttttaaaataacttacaactatggaaagtaaag 260
Query: 61 acattttaatgtacttttattagattttgttgtcttagaccaaaacctatgaaggaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattttaatgtacttttattagattttgttgtcttagaccaaaacctatgaaggaaaac 320
Query: 121 cattctaaatttagagcatgggagatctatggacagtggttcaggaatatgaaatgcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattctaaatttagagcatgggagatctatggacagtggttcaggaatatgaaatgcatt 380
Query: 181 gcgggtaatgggatttgtattcggaatcatgcaacttctaattggagcattgtct 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgggtaatgggatttgtattcggaatcatgcaacttctaattggagcattgtct 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no295_n20.g1 MSMg01no295_n20.g1 CHROMAT_FILE:
MSMg01no295_n20.g1 PHD_FILE: MSMg01no295_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:55 2005
(287 letters)
>mm_chr5_80926740_80927425
Length = 686
Score = 418 bits (216), Expect = e-121
Identities = 267/290 (92%), Gaps = 13/290 (4%)
Strand = Plus / Minus
Query: 1 agttagaaatattcttatctagaaaagtggcagaagttgattattctctaggggctatga 60
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 647 agttagaaatattcttatctagaaaagtggcagaagttggttcttctccaggggctatga 588
Query: 61 tttcactagccaggtgactagctaggtttacagtactaggcatgaactctttactgttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tttcactagccaggtgactagctaggtttacagtactaggcatgaactctttactgttgt 528
Query: 121 gtagggcgtaagtccaattagacggctggttttattttgttgtttttttgtttttgttta 180
||||||| ||||||||||| || |||| ||||||||||||||||| |||||||||||
Sbjct: 527 gtagggcataagtccaattcgatggctagttttattttgttgttt----gtttttgttta 472
Query: 181 ttttttatatccaaatataaatgctactctcgccccccccc--c--ggaggatgttttgc 236
||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 471 ttttttatatccatatataaatgctactctc-----ccccctacttggaggatgttttgc 417
Query: 237 tgttctcaccagtgatgaggttcacaggcgttacaggagtgtagggctgt 286
||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 416 tgttctcaccagtgatgaggttcacgggcgttacaggagcgtagggctgt 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space: 188206
Effective search space used: 188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
