TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTGGTTTATCCCCAGTCCAGATCCTTAGCCTCAGGCATTTGTTT
GAAAGAAACATTACCTGGATACTTCCCCTTTCATTCTTAAAACTCATAGC
ACAAAATGCTAGGTTCTGAAATATTGTTATGTATTGACTATATCCTGTAC
TTACATAATATAGATATTTCTAGATATCCTTCTTATTTCTGCCTACTGCA
TAAATACATTTTTCTACAAAGTCCTTTCATATACTTCCATAAAGGTCTTT
TTTCAAGGAAACTGATGATACAAATTTAAACACATTCTTGTTTAGTCTGT
ACTGAACATTTTTACTATTTATGAACAACCCCTCAGTTTGAAGCTGTGAT
AAGTCTTTGTTGTGCTACCCCCCTTTTTCCTGAAAACTAACTTTACCTTC
CACCCTCTACTGCATAGAAGGGATCTGAGGAGGCCATTGTTTGTTGTGGG
TTCACATTTGTTTTGATGAGCCTGTTGTTATAGTTATTGCATTTTATCCT
TTCTAAGTAATTGAGATCCACCTCTGCTGACCTTTTTTTTTTTTCATTGT
TTATCTTCTAATCATCTCACATCCGAATGAGAGTGTTAGCTTGGCTGTCT
GAGGTTTTCTTTCTTTTGTCTTTTGAGTAGTCTCCCTTTTATGGCACTCT
GCTGCTGAATCCCTCTCTTCAATCAGTTTCTTAGATATCTAAG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACGTGAAAATGTCTTCCCTACTGGCT
ATATTTCTTAGTGCCAGATGATACCACGCAGGCTGATAGGGGAGAAGAGA
CATCAGTGGTCTTACCCAGTACTAAAAATAACCGCCCCCCCCCAAGGAGA
AGTTTGTCAACTGCTTCAATATTGACGTAGCTGCTATGGAATGATTCATC
CTCATCACATTCTGATTATTCTGCCTTTCTGTGTGAAGTGCACCATGGAA
AATTAACAGTGGACACATGCTCAAAAGAGAATTATATTCCCTTTCCTAGT
GAAAGAAAGATGAAATTTCAAGACCTGTAAGTCATATATAAAGTACTCAG
AAATTGCTGGTTGTTTGCGCACCTAGAGGCTGCCTGGGGCTGAGAAAAAA
GAAAAGCAAACCTGGGTATGCCCCGTAGTTAAAATATTCCTGGGAACAGC
TTAACCTTAAAGATAAAGAGGAATGTGAGGACATAACAGGGCTGTCTAAA
CTGAGTCAACAATTCACAGAACTCTGACAACCTGCACGTACATGTAATTT
TTCTGCTGATGTTTGAATAAGCCAATAGTGTGTTGATATGCTGAATTCCA
CATCCTTAAGACCCTTAACCCATAAAAACTCCTAGCTTCCTAGCCTCGTG
GCCATCATCCGTTATCTCCTGTGTGGGATGCATGTCAGCCCGGAG

Query= MSMg01no295_p21.g1 MSMg01no295_p21.g1 CHROMAT_FILE:
MSMg01no295_p21.g1 PHD_FILE: MSMg01no295_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:04 2005
         (619 letters)



>mm_chr5_11706580_11707598
          Length = 1019

 Score =  917 bits (474), Expect = 0.0
 Identities = 526/552 (95%), Gaps = 17/552 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgcaggctgataggggagaagagacatcagtggtcttacccagtactaaaaataaccg-- 58
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  
Sbjct: 551 cgcaggctgataggggagaagagacatcagtggtcttacccagtaatacaaataaccgcc 492

                                                                       
Query: 59  ------------ccccccccc-aaggagaagtttgtcaactgcttcaatattgacgtagc 105
                       ||||||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct: 491 ccgcccaccccccccccccccgaaggagaagtttgtcaactgcttcaatactgacatagc 432

                                                                       
Query: 106 tgctatggaatgattcatcctcatcacattctgattattctgcctttctgtgtgaagtgc 165
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 431 tgctatggaatgattcatcctcatcacattctgattattctgactttctgtgtgaattgc 372

                                                                       
Query: 166 accatggaaaattaacagtggacacatgctcaaaagagaattatattccctttcctagtg 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 accatggaaaattaacagtggacacatgctcaaaagagaattatattccctttcctagtg 312

                                                                       
Query: 226 aaagaaagatgaaatttcaagacctgtaagtcatatataaagtactcagaaattgctggt 285
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 311 aaagaaagatgaaatttcaagacctgtaaatcatatataaagtactcagaaattgctggt 252

                                                                       
Query: 286 tgtttgcgca-cctagaggctgcctggggctgagaaaaaagaaaagcaaacctgggtatg 344
           |||||| | |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgtttgtg-agtctagaggctgcctggggctgagaaaaaagaaaagcaaacctgggtatg 193

                                                                       
Query: 345 ccccgtagttaaaatattcctgggaacagcttaaccttaaagataaagaggaatgtgagg 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ccccgtagttaaaatattcctgggaacagcttaaccttaaagataaagaggaatgtgagg 133

                                                                       
Query: 405 acataacagggctgtctaaactgagtcaacaattcacagaactctgacaacctgcacgta 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 acataacagggctgtctaaactgagtcaacaattcacagaactctgacaacctgcacgta 73

                                                                       
Query: 465 catgtaatttttctgctgatgtttgaataagccaatagtgtgttgatatgctgaattcca 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  catgtaatttttctgctgatgtttgaataagccaatagtgtgttgatatgctgaattcca 13

                       
Query: 525 catccttaagac 536
           ||||||||||||
Sbjct: 12  catccttaagac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)