Query= MSMg01no296_d24.b1 MSMg01no296_d24.b1 CHROMAT_FILE:
MSMg01no296_d24.b1 PHD_FILE: MSMg01no296_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:23 2005
(306 letters)
>mm_chr5_37625143_37625848
Length = 706
Score = 485 bits (251), Expect = e-141
Identities = 283/297 (95%), Gaps = 9/297 (3%)
Strand = Plus / Plus
Query: 1 aaaatgtgcatggagcattttgtggtgagactcatctgtgagtctggttcatcatccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatgtgcatggagcattttgtggtgagactcatctgtgagtctggttcatcatccctg 260
Query: 61 cagaggatgggaactcgggtctcacacaggactgcttcgtgctcccttggctcagcaggt 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 cagaggatgggaactcgggtctcacacaggactgctttgtgctcccttggctcagcaggt 320
Query: 121 aattgagtgaggtttatcatttcaggggtttcttctcctataagctctgagccgattaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattgagtgaggtttatcatttcaggggtttcttctcctataagctctgagccgattaaa 380
Query: 181 agagactaatggcccttgtttgtttccaagctgagaacctaggtctggaagatgaaactt 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 agagactaatggcccttgtttgtttccaagctgagatcctaggtctggaagatgaaactt 440
Query: 241 ctctctccctccctccctccttc-cttccttctttcctccctttctccctgccttcc 296
||| |||||||||||||||| || ||| | ||||||| ||||||| ||||||
Sbjct: 441 ctc----cctccctccctccttctctccct-c---cctccctctctccctcccttcc 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space: 207009
Effective search space used: 207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_d24.g1 MSMg01no296_d24.g1 CHROMAT_FILE:
MSMg01no296_d24.g1 PHD_FILE: MSMg01no296_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:23 2005
(288 letters)
>mm_chr5_37778342_37779029
Length = 688
Score = 509 bits (263), Expect = e-148
Identities = 281/287 (97%)
Strand = Plus / Minus
Query: 1 caggcctgactaccacacccagctgttacaacactgcctatggagggaccaggcacactt 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 487 caggcctgactaccacacccagctgttataacactgcctatggagggaccaggcacattt 428
Query: 61 cattcactggcaacccactggatgattcagataggtctatgtccacccccagccccagaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 427 cattcactggcaacccactggatgattcagataggtctatgtccacccccagacccagaa 368
Query: 121 actgggttaccaatccttctggcctacagtacatcatctcatgatgaccctgccggtcat 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 actgggttacccatccttctggcctacagtacatcatctcatgatgaccctgccggtcat 308
Query: 181 gtgtaatcctgtatgacatttaggcagtgtgtaccactaataaatgctgcaaatcttatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtgtaatcctgtatgacatttaggcagtgtgtaccactaataaatgctgcaaatcttatt 248
Query: 241 tgtctggtgatggcatcatatgctcagacatcctgcctctccctcct 287
||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 247 tgtctggggatggcatcatatgctcagatatcctgcctctccctcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
