BAC Information

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BAC

Clone NameMSMg01-296H23
Chromosome5 (Build37)
Map Location 82,125,423 - 82,125,711
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296H23.T7 (MSMg01no296_h23.b1)MSMg01-296H23.TJ (MSMg01no296_h23.g1)
ACCAG424093AG424094
length744748
length of high quality
(start - end)
321 (46 - 366)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no296_h23.b1 PHD_FILE: MSMg01no296_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:42 2005CHROMAT_FILE: MSMg01no296_h23.g1 PHD_FILE: MSMg01no296_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTCAACTGTACCTGTGTATTCTCTATTTTTTGAGGGGGGGGGTA
ATATCCACTTATTAGTTAGTACATACCATGCATGTCATTTTGCATATGAG
TTACTGCACTTGGGATGATATTTTCTAGTTCCATCCATTTGCCTGCAAAA
TTCAGAATGTCAACGTTCTTTATAGTTGAGTAAATTCCATTGTGTAAATG
AACTACGTTTTCTGTATCTATTCTGCTGTTGTGGGACATCTAGGTTGTTT
CCAGATTCTGGCGATCCCAAATAATGAACACGTGCCCCTATGGCATGGTG
GTCATCTTTTGGTTANATCCCTTACACCGCGTCCCCTGGGTCTTCAGGTA
GATCTATCTCCAATTTTCTGACCAACCTCAAGAAAAATTTCCAGAGTGGT
TGTACCACTTTGCAATTCCACCAGCAATGGAGGAATGTTGCTCTTTCTCC
ACATCCTCTCCAACATATGTTGTCTCATGATGTTTTGATCTTCGCCATTC
TGACTGGTGTAAAGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCTCTG
ATCACTAAGGACTTTGAACATTTTGTTAGGTGCTTCACGGCCATTCAATA
TTCCTCAGTTGTGAATTCTCAGTTTAGTTCTATACCCCATTTTTTGATTG
GGCAGTTGGAATTTTGGTGATTAACTTCTCGAGGTCTTCATATA
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGTGATGTGGCTAAGTTCAGT
GAGCTTAACATCCATACGGAAGGACTGGAGTCTGAACACATACTCGCATA
CTACATGGCCTACATGTCTCAGTGTTTATATGTGACACATAAAGTGGGCA
AATTAAATTCAAACCGATTTACAATATTTAACTGTCACAACAAGGGAGGC
ACACAAAACCTGAACTCAGAATTCTCACAATGACCTGAGTTCTACTGAAG
GGTGACACTGTGGGGTGCACCATCCAATGGCAGCCCGTCATCTCCTTTAC
CCTTTAAATGGATGATATTCTAATTAACACCNTCCCCCACAGGGTTTCAG
AGTATAGATGTAGTCTACAAGCACCTTAAGCACAAACAACTTTCTAGAAG
GTGATGACCATGGAATGCTTTCCATTGTGCATAGATACTCCCTGATACCA
GATGTGGAAGGTGTTACACTATCTACACAGTGGAACACAGTTCAATAGTG
CTAGGAAAAGAAGTCTATCACCACGGGAGGTGCAAAGGAAAAATATATTT
TAGTTAGACATAGAACAACAAAAGAACACATAAAACTTGTTACCTTAGTT
ATATACTCTGAGAGATGAATTAGCAATTATATGCTTGTAGACTTTCAACT
CCATGACATCAGTAAGAGTGGAACAGCTATTAGGGTTCATTACTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_h23.g1 MSMg01no296_h23.g1 CHROMAT_FILE:
MSMg01no296_h23.g1 PHD_FILE: MSMg01no296_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:42 2005
         (292 letters)



>mm_chr5_82125223_82125914
          Length = 692

 Score =  474 bits (245), Expect = e-138
 Identities = 278/289 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagtgatgtggctaagttcagtgagcttaacatccatacggaaggactggagtctgaa 60
           ||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |
Sbjct: 201 agtagcgatatggctaagttcagcgagcttaacattcatacggaaggactggattctgca 260

                                                                       
Query: 61  cacatactcgcatactacatggcctacatgtctcagtgtttatatgtgacacataaagtg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 261 cacatactcgcatactacatggcttacatgtctcagtgtttatatgtaacacataaagtg 320

                                                                       
Query: 121 ggcaaattaaattcaaaccgatttacaatatttaactgtcacaacaagggaggcacacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaaattaaattcaaaccgatttacaatatttaactgtcacaacaagggaggcacacaa 380

                                                                       
Query: 181 aacctgaactcagaattctcacaatgacctgagttctactgaagggtgacactgtggggt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 aacctgaactcagaattctcacaatgacctgagttctactgaagggtgacaccgtggggt 440

                                                            
Query: 241 gcaccatccaatggcagcccgtcatctcctttaccctttaaatggatga 289
           |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 gcactatccaatggcagcctgtcatctcctttaccctttaaatggatga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)