Query= MSMg01no296_n13.b1 MSMg01no296_n13.b1 CHROMAT_FILE:
MSMg01no296_n13.b1 PHD_FILE: MSMg01no296_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:08 2005
(321 letters)
>mm_chr5_66801619_66802339
Length = 721
Score = 433 bits (224), Expect = e-126
Identities = 284/320 (88%), Gaps = 30/320 (9%)
Strand = Plus / Minus
Query: 26 tgaatagtgagagcctgtctaaaaa------gtagaaggag---aag-----gggggcgg 71
||||||||||||||||||||||||| | |||||||| ||| ||||| ||
Sbjct: 721 tgaatagtgagagcctgtctaaaaagaagacggagaaggagaacaagagggagggggagg 662
Query: 72 gg------------aattcatcgcaaatttaagcccagatggagtaataccacaagataa 119
|| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 661 gggaggaggaggaaaattcatcgcaaatttaagcccagattgagtaataccacaagataa 602
Query: 120 cttctcaaaataaaaatataaa---aatataaggaggtgagctctagggagaagagggga 176
| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 601 cct-tcaaaataaaaatataaaaataatataaggaggtgagctctagggagaagagggga 543
Query: 177 ggaaaggaaagggaaagagaagggagttaaatttcttctcaacttctctttctctcatta 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ggaaaggaaagggaaagagaagggagttaaatttcttctcaacttctctttctctcatta 483
Query: 237 ttttattaattggaatatttttatgctttctgtatataacacttcatattctattggggt 296
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 482 ttttattaattggaatatttttatgctttctgtatataacacttcaaattctattggggt 423
Query: 297 ggggaataaatattttctcc 316
||||| ||||||||||||||
Sbjct: 422 ggggattaaatattttctcc 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_n13.g1 MSMg01no296_n13.g1 CHROMAT_FILE:
MSMg01no296_n13.g1 PHD_FILE: MSMg01no296_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:08 2005
(212 letters)
>mm_chr5_66637365_66637976
Length = 612
Score = 391 bits (202), Expect = e-113
Identities = 208/210 (99%)
Strand = Plus / Plus
Query: 1 tttttgttgagtctggcattttcagtgataaacagcacaggcaagaatgccatcgattca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tttttgttgagtctggcattttcagtgataaacagcacaggcaagaatgccatcaattca 260
Query: 61 gttatctcactgaaatgacatttttagttcagaaagaaaatgcctgctacagacacatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttatctcactgaaatgacatttttagttcagaaagaaaatgcctgctacagacacatag 320
Query: 121 tgaaatgttaaacactgacagtacagccaagtcactaaatctgatgcagggtgtgtgtgt 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagatgttaaacactgacagtacagccaagtcactaaatctgatgcagggtgtgtgtgt 380
Query: 181 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 210
||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space: 122409
Effective search space used: 122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
